Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01361 and RBAM_008370

See Amino acid alignment / Visit BSNT_01361 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:03
# Commandline: needle
#    -asequence dna-align/BSNT_01361___yfiA.1.9828.seq
#    -bsequence dna-align/RBAM_008370___glvR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01361___yfiA-RBAM_008370___glvR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01361___yfiA-RBAM_008370___glvR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01361___yfiA
# 2: RBAM_008370___glvR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity:     592/779 (76.0%)
# Similarity:   592/779 (76.0%)
# Gaps:          31/779 ( 4.0%)
# Score: 2217.5
# 
#
#=======================================

BSNT_01361___      1 ATGCAG-CTCGAAGAACTGATCAATCAGCACTACAGC-AAATTGAATGAC     48
                     ||| || ||.|||||||||.|.||.|||||.||| || |||||.|||||.
RBAM_008370__      1 ATG-AGTCTTGAAGAACTGGTTAACCAGCATTAC-GCGAAATTAAATGAT     48

BSNT_01361___     49 AACGATTTTCATATTTTAAAATATATATTGAATCATAAGCACACATGCTA     98
                     |||||||||.||||||||||||||||||||||||||||.||.||.||.||
RBAM_008370__     49 AACGATTTTTATATTTTAAAATATATATTGAATCATAAACATACGTGTTA     98

BSNT_01361___     99 TCACCTTGGAATCGACGCGCTTGCCAAAGCTTGCAGTGTATCGCGTTCCT    148
                     .||.||.||.|||.|.|.|.|.||.|||||.||||.|||.||.||.||.|
RBAM_008370__     99 CCATCTCGGTATCAATGAGATGGCGAAAGCCTGCAATGTCTCTCGGTCTT    148

BSNT_01361___    149 CAATTTTACGGCTTGCCCAAAAGCTCGGTTTCAGCGGTTACAGTGAATTT    198
                     |.||..|.|||||.|||||||||||.||.||||||||.|||||||||||.
RBAM_008370__    149 CCATCCTGCGGCTCGCCCAAAAGCTGGGCTTCAGCGGCTACAGTGAATTC    198

BSNT_01361___    199 CGCGTCTTTTTAAAGTGGGAAGATCAGCCGGAAGAAGGCGAGAGTATGAG    248
                     ||.||.|||.|.||.|||||.||||||||.|||||.|||||||.|||||.
RBAM_008370__    199 CGGGTTTTTCTGAAATGGGAGGATCAGCCTGAAGAGGGCGAGAATATGAC    248

BSNT_01361___    249 TTTTCAAAAGCTGCTTGATGATATTGAAGCAAATTTGAAGTTCTTACG--    296
                     .|||.||||||||||.||||||||||||||.|||.|.||    .||||  
RBAM_008370__    249 ATTTGAAAAGCTGCTGGATGATATTGAAGCCAATGTAAA----ATACGTG    294

BSNT_01361___    297 --GACAAAGGACATGACGGACATGTGCCAGCTGATTGATGAAGCGGACCG    344
                       |.||||.||.||||||||.|||||||.||||||.||||||||..|.||
RBAM_008370__    295 AAGTCAAAAGATATGACGGAGATGTGCCGGCTGATAGATGAAGCAAAACG    344

BSNT_01361___    345 CATTTTCGTCTACGGTTCTGGAAATGCGCAAAAGATATGCGCCCGCGACC    394
                     .||||||||.|||||.||.||.|..||.||.|.|.|.||||||||.||.|
RBAM_008370__    345 GATTTTCGTTTACGGATCGGGCACGGCTCAGAGGGTGTGCGCCCGTGAGC    394

BSNT_01361___    395 TGCAAAGAATGTT--TATTCCGCGCCATCGC-----TATCTTATTTTGAT    437
                     ||||..|.|||||  |||.|||       ||     |||||.|||||.||
RBAM_008370__    395 TGCAGCGGATGTTTGTATCCCG-------GCGGAAGTATCTGATTTTAAT    437

BSNT_01361___    438 TGAAGATA-CAAATGAATTTAATTTGATGCGCGATGATTTTAAAGTAAAC    486
                     |.|.||.| ||.| ||.|||.||.|.|||.|.|||||||||||.||..|.
RBAM_008370__    438 TCAGGACATCACA-GAGTTTGATATCATGTGTGATGATTTTAAGGTTGAT    486

BSNT_01361___    487 GATCTGTTTATCATCATTTCTCTTTCCGGAGAAACACCGGAGCTGATTCC    536
                     ||..|.||.|||||.||||||.|.||.||.||||||||.||..|.|||||
RBAM_008370__    487 GACGTATTCATCATTATTTCTTTATCAGGCGAAACACCCGAATTAATTCC    536

BSNT_01361___    537 TCAGGCAAGAATGCTTTCTGCAAAGGGTATTCCCTTTATTTCCATTACGA    586
                     .||||.|||.|..||.||.||||||||..||||.||||||||.||.||.|
RBAM_008370__    537 GCAGGTAAGGACCCTGTCCGCAAAGGGAGTTCCGTTTATTTCAATCACCA    586

BSNT_01361___    587 ATTTAAAAAACAATGTCCTCGCCCAGCTGACTCCGCATAATCTTTATGCG    636
                     ||.|.||||||||.||.||.||.||...|||.|||.||||||||||||||
RBAM_008370__    587 ATCTGAAAAACAACGTACTGGCGCAAACGACGCCGTATAATCTTTATGCG    636

BSNT_01361___    637 ACAAGCAAACCTGTGACATTAAGCGATAAAACGGAAATTGTCGCTTTTGC    686
                     ||.|||||.||.|||||.||||||||||||||||||||.|||||.|||||
RBAM_008370__    637 ACCAGCAAGCCGGTGACGTTAAGCGATAAAACGGAAATCGTCGCATTTGC    686

BSNT_01361___    687 ACCGTTTTTTCTCGTTGGCGAAGCATTGTTCCGCGCATATGTTGATTACA    736
                     .|||||||||||.||.||||||||.||.|||||.||||||||||||||.|
RBAM_008370__    687 CCCGTTTTTTCTGGTGGGCGAAGCGTTATTCCGTGCATATGTTGATTATA    736

BSNT_01361___    737 AAGAGGCAGAAAAAAATGACAATGAGTAG    765
                     |||||...|||||...|||.||..||   
RBAM_008370__    737 AAGAGCTCGAAAATTTTGATAAATAG---    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01361 and RBAM_008370

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
