Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01366 and RBAM_008400

See Amino acid alignment / Visit BSNT_01366 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:04
# Commandline: needle
#    -asequence dna-align/BSNT_01366___yfiB.1.9828.seq
#    -bsequence dna-align/RBAM_008400___yfiB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01366___yfiB-RBAM_008400___yfiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01366___yfiB-RBAM_008400___yfiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01366___yfiB
# 2: RBAM_008400___yfiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1764
# Identity:    1308/1764 (74.1%)
# Similarity:  1308/1764 (74.1%)
# Gaps:          72/1764 ( 4.1%)
# Score: 4680.0
# 
#
#=======================================

BSNT_01366___      1 ATGCAAAAGGCTTTGTCGTTTTTAAAACCATATTCATTGCTGGCGGGAAT     50
                     |||..|||||||||.||.|.|.|||||||.|||||..|..||||||||||
RBAM_008400__      1 ATGTCAAAGGCTTTATCATATGTAAAACCGTATTCTCTTTTGGCGGGAAT     50

BSNT_01366___     51 TGCGCTGATTCTTATGTTGACGGAGCTTGCAGTTGAACTGATGCAGCCTT    100
                     .||.|||.||.|.|||.|.|..||||||||.||.||.|||.|.|||||..
RBAM_008400__     51 CGCTCTGTTTTTCATGCTCATCGAGCTTGCGGTAGAGCTGCTACAGCCCC    100

BSNT_01366___    101 TATTAATTGCAAAAATCATCGACGATGGGATATTGAAGCAAGATCTGCGG    150
                     |..|.||.|..||||||||.|||||.||.||.||.|||||.||||| |||
RBAM_008400__    101 TGCTGATCGGGAAAATCATTGACGAAGGAATTTTAAAGCAGGATCT-CGG    149

BSNT_01366___    151 CA-TGTATGGATATGGGGCGCGGTCATGATCGGGCTGACCG-TGTTATCC    198
                     .| .||.|||.|.|||||||..||.||||||||.||||||| |||| ||.
RBAM_008400__    150 AACGGTTTGGCTGTGGGGCGGCGTGATGATCGGACTGACCGCTGTT-TCA    198

BSNT_01366___    199 TTTGCGGCGGGGATGCTGAATTCCTTTTATGCCGCCCATGTCAGCCAAAG    248
                     ||.||..||||.||..|.|||||.||.||..|||||||..|||||||.||
RBAM_008400__    199 TTCGCATCGGGCATTTTAAATTCATTCTACTCCGCCCACATCAGCCAGAG    248

BSNT_01366___    249 CTTTTCCTATGATACGAGAAAAGGGCTTTTTCAAAAAATCCAGTCCTTCT    298
                     ||.|.|.|||||||||.||||||||||||||||||||||.||.|||||||
RBAM_008400__    249 CTATGCGTATGATACGCGAAAAGGGCTTTTTCAAAAAATTCAATCCTTCT    298

BSNT_01366___    299 CCTATTCCACATTTGGACAGTTTTCGTCCTCTTCTTATATTACAAGGCTG    348
                     |||||||.||.||||..||.||.||.|||.|.||.|.|||.||..|||||
RBAM_008400__    299 CCTATTCGACGTTTGCGCAATTCTCATCCACATCGTTTATCACCCGGCTG    348

BSNT_01366___    349 ACAAACGACGTCACACAGGTTCAAAATATGATTTTTATGAGTTTGCGGTT    398
                     ||||||||.||.|||||||||||.||||||.||||.||||||.|.|||||
RBAM_008400__    349 ACAAACGATGTGACACAGGTTCAGAATATGCTTTTCATGAGTCTCCGGTT    398

BSNT_01366___    399 TATGCTGCGGGCTCCCTTAATGATTGCAGGCGGCATTGTGCTGTCGCTTG    448
                     ||||||.|||||.||.|||||||||||.||.||||||.|.||.|||||..
RBAM_008400__    399 TATGCTCCGGGCGCCGTTAATGATTGCGGGGGGCATTATTCTCTCGCTGA    448

BSNT_01366___    449 CCGTTAATGTGAAACTCGGCTTTTTTCTGCTTGTGACCATTCCGATCCTG    498
                     ||||.||||.|||||||||.|||||||||||..|.||..|.|||||..||
RBAM_008400__    449 CCGTCAATGCGAAACTCGGGTTTTTTCTGCTGATCACGGTGCCGATTTTG    498

BSNT_01366___    499 ATCTTGTTTTTGCTATGGGTATTAAGGAAAGGCGGGGCACTGTTCCGCTC    548
                     .|.|||||||||||.|||||..|.|..|.||||||.||.|||||.||.||
RBAM_008400__    499 CTTTTGTTTTTGCTGTGGGTGCTGAAAAGAGGCGGCGCGCTGTTTCGGTC    548

BSNT_01366___    549 AGTGCAGAAAAGGCTGGATCAAGTGAACACCATCATGCAGGAAAATTTAA    598
                     .|||||.||..||||.|||||.||.|||||.||||||||||||||..|.|
RBAM_008400__    549 TGTGCAAAAGCGGCTTGATCAGGTCAACACGATCATGCAGGAAAACCTGA    598

BSNT_01366___    599 TCGCAATCAAGCTGATCAAAGCGCTGCTTCGCGGCAGCCACGAAGTCAAA    648
                     ..||.|||||.|||||.||||||||.||.||.|..|.|||||||||.|||
RBAM_008400__    599 CGGCGATCAAACTGATTAAAGCGCTCCTCCGTGCAAACCACGAAGTGAAA    648

BSNT_01366___    649 CGATTTATCAAAGCCAACACAAGGCTGATGGAAAAAACGGTTTCGGCCTT    698
                     ||.|||.|.|||.|.||.||.|.||||||||||||||||||.||.||.||
RBAM_008400__    649 CGTTTTTTGAAATCGAATACGAAGCTGATGGAAAAAACGGTCTCCGCTTT    698

BSNT_01366___    699 TCAGCTTGTGGAATTCACGATGCCTGTACTGATGCTTTTGATGAATCTCT    748
                     ||..||.||||||....|||||||..|..|.|||||..|||||||..|.|
RBAM_008400__    699 TCGTCTCGTGGAAGCGGCGATGCCGATTTTAATGCTGCTGATGAACATTT    748

BSNT_01366___    749 GTATCCTTTTGATTTTGTGG-GCGGGGTCCTACAGTATTAC---GAGCGG    794
                     ||||..|.||.||.||.||| .|||.| ||.|.||.|||.|   |.||||
RBAM_008400__    749 GTATTTTGTTTATCTTATGGTTCGGCG-CCAAAAGCATTGCTCAGGGCGG    797

BSNT_01366___    795 AAGCACTCAGGTTGGCGATGTTGTTGCGATAATTAACTACGCAACACGAA    844
                     |   .|.|||||.||||||||.|||.|..|.||||||||.||.||.||.|
RBAM_008400__    798 A---GCGCAGGTCGGCGATGTCGTTTCCGTCATTAACTATGCGACGCGGA    844

BSNT_01366___    845 TTACAGGCGCGCTTTCGATGTTTCCGTTTTTGATTATG--ATTTTCACCA    892
                     |||||||||||||.||..|..||||.|||.|.||.|||  |||||  ||.
RBAM_008400__    845 TTACAGGCGCGCTGTCCGTCCTTCCTTTTCTCATCATGGTATTTT--CCC    892

BSNT_01366___    893 GGGCGAAGGCTTCAGGGGATAGAATCGGTGAGGTGCTTGAAACAGAAGGC    942
                     |||||||||||||.||.||.||||||||.||||||||.||||||||||||
RBAM_008400__    893 GGGCGAAGGCTTCCGGAGAAAGAATCGGCGAGGTGCTGGAAACAGAAGGC    942

BSNT_01366___    943 GACGAG----CGGG--AGGA--AGGCATCATATTTGATCGTTTGTCAGGA    984
                     |.||||    ||||  ||||  .||||       .|..||.||| ||||.
RBAM_008400__    943 GGCGAGGGAACGGGGCAGGACCCGGCA-------CGGGCGCTTG-CAGGC    984

BSNT_01366___    985 CAGATTGAGTTTCAGC-ATGTATCCTTTCGCTATCCTGAAATGGACAGAG   1033
                     ..||||||||||| || |.||.|||||.||||||||.|..|||||.|.||
RBAM_008400__    985 GGGATTGAGTTTC-GCGAAGTGTCCTTCCGCTATCCGGGCATGGAAAAAG   1033

BSNT_01366___   1034 AAGCGCTCAGGAAT---GTCTCATTTTCCGCAAAGCCAAGAGAAACGATC   1080
                     |.|||||   |.||   ||.||.|||||.||.|..||.|.|||||||.|.
RBAM_008400__   1034 ACGCGCT---GCATCACGTGTCCTTTTCAGCCAGCCCGAAAGAAACGGTT   1080

BSNT_01366___   1081 GCGATTCTCGGTGCGACGGGCTCGGGCAAGTCCACGCTTTTTCAGCTCAT   1130
                     ||.|||.|.||.|||||.||.||.||.||.||.||||||||||||||.||
RBAM_008400__   1081 GCCATTATGGGCGCGACAGGTTCAGGAAAATCAACGCTTTTTCAGCTGAT   1130

BSNT_01366___   1131 CCCGCGGCTTTATCA-GCCGGATTCAGGCCGCATTTACATAGATGAAAAG   1179
                     .|||||.||.|| || |.|.|||||.|||.|.||||.||||||.|..||.
RBAM_008400__   1131 TCCGCGCCTGTA-CACGGCTGATTCGGGCAGTATTTTCATAGACGGCAAA   1179

BSNT_01366___   1180 C----CGGTTCAAGATATTC-CGGCTGAAGGGCTGCGCAGGCAAATTGGA   1224
                     |    ||||    || |||| |.|||...||||||||||||.||||.||.
RBAM_008400__   1180 CCGATCGGT----GA-ATTCTCCGCTTGCGGGCTGCGCAGGGAAATCGGC   1224

BSNT_01366___   1225 TATGTACCGCAGGAAGTCCTCTTGTTTTCCGGCACAATCAAAGAAAACAT   1274
                     |||||.|||||||||||.||..|||||||.|||||.|||...|||||.||
RBAM_008400__   1225 TATGTTCCGCAGGAAGTGCTTCTGTTTTCAGGCACCATCCGTGAAAATAT   1274

BSNT_01366___   1275 CGCTTGGGGCAAAGAAAATGCTTCACTAGATGAAATAATGGATGCGGCCA   1324
                     |||.|||||....||..|||||||||||||||||.|||||||.|||||||
RBAM_008400__   1275 CGCCTGGGGGCGGGAGGATGCTTCACTAGATGAAGTAATGGAAGCGGCCA   1324

BSNT_01366___   1325 AACATGCGCAAATTCATGAAACGATTTTGAAGCTCCCAAATGGATATGAC   1374
                     ||.|.||||||||.|||||.||||||.|||||||..||||.|||||.|||
RBAM_008400__   1325 AAGACGCGCAAATCCATGACACGATTATGAAGCTGTCAAACGGATACGAC   1374

BSNT_01366___   1375 ACAGTTTTGGGGCAAAGAGGCGTCAACCTGTCCGGCGGCCAAAAACAGCG   1424
                     ||.||..||||.||..|.||||||||..||||.|||||.||.||.|||||
RBAM_008400__   1375 ACGGTGCTGGGACAGCGGGGCGTCAATTTGTCAGGCGGGCAGAAGCAGCG   1424

BSNT_01366___   1425 AATTTCCATTGCGCGGGCACTGATTCGAAAACCGGCTATCCTTCTATTAG   1474
                     .||||||||.|||||.||..|.||..||||.|||.|..||||.||.||||
RBAM_008400__   1425 GATTTCCATCGCGCGCGCTTTTATCAGAAAGCCGTCCCTCCTGCTGTTAG   1474

BSNT_01366___   1475 ATGACAGCACAAGCGCGCTTGATCTGCAAACGGAGGCGAAGCTGCTTGAA   1524
                     |||||||.||.||||||||||||||.||.|||||.||||||||..|..||
RBAM_008400__   1475 ATGACAGTACGAGCGCGCTTGATCTTCAGACGGAAGCGAAGCTTTTACAA   1524

BSNT_01366___   1525 GCAATCAGCACATACCATTGCACAACTTTGATCATTACACAAAAAATAAC   1574
                     ||.|||||..|.||..|.|||||.||..||||.|||||||||||||||||
RBAM_008400__   1525 GCGATCAGATCCTATGAATGCACGACACTGATTATTACACAAAAAATAAC   1574

BSNT_01366___   1575 CACGGCGATGAAAGCTGATCA-GATTTTGCTGCTTGAGGACGGCGAACTG   1623
                     .||.|||||||||||||| || .||.||..|||||||.|||||.||||||
RBAM_008400__   1575 GACTGCGATGAAAGCTGA-CACCATCTTATTGCTTGAAGACGGAGAACTG   1623

BSNT_01366___   1624 ATTGAAAAAGGCACTCATAGTGAGCTGCTTTCTGCATCTCAGTTATACAA   1673
                     .|.|..||||||||.||.|..||||||.|..|...||||||..|.|||..
RBAM_008400__   1624 CTGGCCAAAGGCACGCACAAAGAGCTGATGGCACAATCTCATCTGTACCG   1673

BSNT_01366___   1674 GCGCATTTACGAGTCACAATTCGGAAGGGAGGGGAGC-GAGTC-ATGCTA   1721
                     .|..|||||.||.|||||||||||||.||| |||||| ||  | ||||.|
RBAM_008400__   1674 ACAGATTTATGAATCACAATTCGGAAAGGA-GGGAGCTGA--CAATGCAA   1720

BSNT_01366___   1722 A-------------   1722
                     |             
RBAM_008400__   1721 AAAGACATTCGTAA   1734


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