Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01391 and RBAM_008470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01391___yfiQ.1.9828.seq
# -bsequence dna-align/RBAM_008470___yfiQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01391___yfiQ-RBAM_008470___yfiQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01391___yfiQ-RBAM_008470___yfiQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01391___yfiQ
# 2: RBAM_008470___yfiQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1200
# Identity: 751/1200 (62.6%)
# Similarity: 751/1200 (62.6%)
# Gaps: 222/1200 (18.5%)
# Score: 2280.0
#
#
#=======================================
BSNT_01391___ 1 ATGCAAATTAAAGAAATTTTTATGATCCGCTGCGTTTCGTGCTTAAGTGT 50
|||||.||.|||||||||||..||||.||||||.|.||.||.||||||||
RBAM_008470__ 1 ATGCAGATAAAAGAAATTTTCGTGATTCGCTGCCTGTCCTGTTTAAGTGT 50
BSNT_01391___ 51 CGTCTTGCTCCATATCATTTCAATGGTCCTGATGCTTCAGGCAGA----- 95
.||..||||.||..|..||||||||||.||||||.||||||.|||
RBAM_008470__ 51 GGTTCTGCTTCACGTAGTTTCAATGGTGCTGATGATTCAGGAAGAGTCCT 100
BSNT_01391___ 96 -AGCTCTTGCAGATATTTCTCACACTGTTGATTCTTTCCGCACACTCCTG 144
|||...|||.| |.||.||.||||||.||||.||.||.||..||
RBAM_008470__ 101 TAGCCAGTGCCG------CCCATACGGTTGATGCTTTTCGGACCCTGTTG 144
BSNT_01391___ 145 ATGTTCAGCACGCCCGCTTTTATTTTCATCTCTGAATTTTTACTGGCCCG 194
||||||||||||||.||.|||||.||.||.||.||||||.|.||.|||.|
RBAM_008470__ 145 ATGTTCAGCACGCCGGCGTTTATCTTTATTTCGGAATTTCTGCTTGCCAG 194
BSNT_01391___ 195 TTCTTATCCTGATGGGGTGCCTGACGGTTTTTTAAAGAAGCGGGGAAAAG 244
.||.||.||.|..||.||.||.|..||||||||||||||..||||.||||
RBAM_008470__ 195 GTCATACCCGGGAGGCGTTCCCGCGGGTTTTTTAAAGAAAAGGGGCAAAG 244
BSNT_01391___ 245 TGATTTTTGTTCCTTTTTTATTTATCGCGGCCATCGATGCGCTGCTGATG 294
|.|||||.||.||.|||.|.|||||.||.||..|.|||||..|..|.|||
RBAM_008470__ 245 TCATTTTCGTGCCGTTTCTGTTTATTGCCGCGGTGGATGCCATTTTAATG 294
BSNT_01391___ 295 ACCAGTGCGATGGGGGGAGAGGTAAC---CTTTCTCGCGTTT--GTGCAA 339
|..||.| |||.||.|||.|.|.| ||| ||||| ||| |
RBAM_008470__ 295 AAAAGCG---TGGCGGAAGAAGGAGCCGGCTT-----CGTTTCAGTG--A 334
BSNT_01391___ 340 -----AAATATCTGGCGAACGTATTCTTAGGAAACTTTATCGGATACTTC 384
||||.|.|.|..||.||.||.|||||||||||.|||||.||||||
RBAM_008470__ 335 TCGGTAAATTTTTAGAAAATGTGTTTTTAGGAAACTTCATCGGCTACTTC 384
BSNT_01391___ 385 ATTCTCGTCATCTTTCAATTTTACATGCTGCATATGATGTTTCA------ 428
|||||.||.|||||||||||||||||.||.||||||.||.|.||
RBAM_008470__ 385 ATTCTTGTGATCTTTCAATTTTACATTCTCCATATGCTGCTGCACCGCTG 434
BSNT_01391___ 429 --TGAGTACTTGAAAAAAGCATCGCCGAAATGGGTGCTGTCTATCTCATT 476
||| || ||.|| |||.||.|..||||||||||||.|.||.||
RBAM_008470__ 435 GCTGA--AC----AACAA--ATCTCCCATGTGGGTGCTGTCTGTGTCGTT 476
BSNT_01391___ 477 TGTGGTGACAGCCGCTTATTTAGGC-----------TATTTC-TCCGCAG 514
|.|..|.|..||||..|||.| ||| |.|||| |||||.|
RBAM_008470__ 477 TATCATCAACGCCGTCTATCT-GGCTTACTTTTCCATCTTTCATCCGCCG 525
BSNT_01391___ 515 CCAGC-CCGGCTCCTGCTTCTGAAGAGGGCGGGGCA--TTTCCGTTCTTC 561
.||.| .|||..|.||.|||| | |||||||||||.
RBAM_008470__ 526 GCATCATCGGGGCTTGATTCT--------------ATTTTTCCGTTCTTT 561
BSNT_01391___ 562 TGGGTTCCGTTCGCAGGCTGGCTTTTCTACTTTTGTCTAGCCTACTATTG 611
|||||||||||..|.||||||.|.||.||.||.|||||.||.|..|||||
RBAM_008470__ 562 TGGGTTCCGTTTCCGGGCTGGGTGTTTTATTTCTGTCTGGCATTTTATTG 611
BSNT_01391___ 612 CGGAAAAGAATACAAGCGTTTTTTAGCGCTGCTGAACCAATACCGCTGGG 661
||||||.|||||...||||||||||.||||..|.||.||.|||||.|..|
RBAM_008470__ 612 CGGAAAGGAATATCCGCGTTTTTTATCGCTAATCAATCAGTACCGTTATG 661
BSNT_01391___ 662 TGGTGTAC------GGCGCCGCA--------ATTGCTTCTGGGGCGCTGG 697
.|||.||| |..||||.| ||||.||.|||
RBAM_008470__ 662 CGGTTTACTTGAGTGCGGCCGTATCGGCAATATTGATTGTGG-------- 703
BSNT_01391___ 698 TTGTCACTGTTTCTTATGTCGGTGAAATCGGCATGATCAGCTCGAAGCGG 747
|.|||||.|||.||.|.| .||||...||...|||.|||||.
RBAM_008470__ 704 ------CCGTTTCATATATCAGCG---GCGGCTCCATTTCCTCTAAGCGT 744
BSNT_01391___ 748 CCTGATATCATGCTGTA----TTCAACAAGCATGATTTTCCTGTGTTTTC 793
||.|||||.|||.|.|| .|| ||.|||||.||.||||||||||
RBAM_008470__ 745 CCGGATATTATGATTTACGCGGTC----AGTATGATCTTTCTGTGTTTTC 790
BSNT_01391___ 794 ACTTGTTTTC------CAAAATGAAGCA--------TGTGCCGAAAATCA 829
|..||||||| ||||| |||.| |||| |
RBAM_008470__ 791 ATCTGTTTTCAAAGCTCAAAA--AAGTACCCGCGATTGTG---------A 829
BSNT_01391___ 830 TGATGTTTATCAGCAACTATTCCTTTTCGATTTATCTGCTTCATGCCTAT 879
||||| ||||||||||||||.|||||.||.||||||||.||..||||.
RBAM_008470__ 830 TGATG---ATCAGCAACTATTCGTTTTCAATCTATCTGCTGCACTCCTAC 876
BSNT_01391___ 880 TTTATGAT-------TAT--------AGGCTACGTGTTGCTTTTGAATAT 914
|||.|.|| ||| |||||| ||||
RBAM_008470__ 877 TTTTTAATCAGCGGATATCTTCTGGAAGGCTA---------TTTG----- 912
BSNT_01391___ 915 GCCCG--AAATTCCTGCCGTACCGGCTGTTCTCCTGC-----TGTTTGCC 957
|| .|||.||| .|.|||||||...||||.| |.||||
RBAM_008470__ 913 ---CGGTCAATGCCT---TTGCCGGCTGCCATCCTTCTTTTATTTTTG-- 954
BSNT_01391___ 958 GTGTGTACAGC-CGGCCCGA--TTCTGACCTCGTGGGCACTG---AATAA 1001
.|.||.|| || |||.||.| ||||.| ||.|||| || ||..|
RBAM_008470__ 955 ATCTGCAC-GCTCGGTCCCATTTTCTTA--TCTTGGG---TGTGCAACCA 998
BSNT_01391___ 1002 ATTCAAATACGGGTATTTATTTGTGGGGAAAATTTATCAGCCAAAACAGA 1051
.||||.||||||.||..|.|||||.||||||.|.||||||||.||.||||
RBAM_008470__ 999 TTTCAGATACGGATACCTGTTTGTCGGGAAAGTATATCAGCCGAAGCAGA 1048
BSNT_01391___ 1052 AGAAGGTAACAGTCGAAGT------GCGTGATCA------CGCAGGGTGA 1089
..|| || |||.| ||| .|||| |.|||..|||
RBAM_008470__ 1049 CCAA---AA-----GAAATACGGCGGCG-CATCAAGGCCGCACAGTCTGA 1089
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