Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01398 and RBAM_008510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01398.1.9828.seq
# -bsequence dna-align/RBAM_008510___yfiU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01398-RBAM_008510___yfiU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01398-RBAM_008510___yfiU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01398
# 2: RBAM_008510___yfiU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1616
# Identity: 696/1616 (43.1%)
# Similarity: 696/1616 (43.1%)
# Gaps: 697/1616 (43.1%)
# Score: 2394.0
#
#
#=======================================
BSNT_01398 1 ATGTCTGAAGCATT---AACAGAGCAGAAAGGCCAAAAGTGGGCGATCAG 47
|||.|.||..|||| ||||| |.|||..|||.|...||||.||||.
RBAM_008510__ 1 ATGCCGGAGCCATTGCAAACAG---AAAAAAACCAGAGCCGGGCCATCAC 47
BSNT_01398 48 CCTGTTTACGATTGGTGTATTTATGGCTGCGCTAGATAACGGAATTATTT 97
.||.||||||||.|||||.||.|||||.|||||.||.|||||||||||||
RBAM_008510__ 48 TCTCTTTACGATCGGTGTGTTCATGGCGGCGCTGGACAACGGAATTATTT 97
BSNT_01398 98 CAGCTGCCTTAACAACGATAAACGAG-TCGTTTGCCGTTTCTCCTTCCTG 146
|.|||||..|.||.|||||.||| || ||.||||..|||||||||||.||
RBAM_008510__ 98 CCGCTGCTCTGACGACGATTAAC-AGCTCTTTTGATGTTTCTCCTTCATG 146
BSNT_01398 147 GGGATCATGGGGCATTACCCTTTATACGCTCGGTCTTAGCGTCAGTGTGC 196
||||||.|||||..|.||||||||.||..|.||.||.||.||||||||||
RBAM_008510__ 147 GGGATCGTGGGGAGTGACCCTTTACACATTGGGACTCAGTGTCAGTGTGC 196
BSNT_01398 197 CAATCGTCGGAAAGCTTTCCGACCGCTACGGCAGAAAAAAACTCTTTCTC 246
|.||.|||||.|||||.||.|||||.|||||..|.|||||.||.|||.|.
RBAM_008510__ 197 CGATTGTCGGCAAGCTGTCGGACCGATACGGGCGGAAAAAGCTGTTTATG 246
BSNT_01398 247 ATTGAGGTTTGCCTGTTCGGACTTGGTTCTTTGCTTGTTGCTTTGAGCCA 296
|||||.||..|.|||||||||||.||.|||||||||||.||..|.||.||
RBAM_008510__ 247 ATTGAAGTCGGGCTGTTCGGACTCGGCTCTTTGCTTGTCGCACTCAGTCA 296
BSNT_01398 297 AAGCTTCCCGCTCTTTCTGATATCGCGGCTGATTCAGGCGCTTGGAGGCG 346
.||||||||..|.|||.||....|.|||||.||||||||||||||.||||
RBAM_008510__ 297 GAGCTTCCCCATGTTTTTGGCGGCACGGCTCATTCAGGCGCTTGGCGGCG 346
BSNT_01398 347 GCGGGATTTTCATCATCGGCAGCTCTCACATTCTCGCGACCCTTCCAAAG 396
||||.|||||.||.|||||.||.||.||..|.||.||....|||||.|||
RBAM_008510__ 347 GCGGAATTTTTATTATCGGGAGTTCGCATGTGCTGGCCGTGCTTCCGAAG 396
BSNT_01398 397 GAAAAACAGGGGAAGGCACTTGGGCTGCTTGGCGCAATGAACGGGATGGC 446
||.|||||.|||||.||.||.|||||..|.||.||.||||||||.|||||
RBAM_008510__ 397 GAGAAACAAGGGAAAGCTCTCGGGCTTTTAGGGGCGATGAACGGTATGGC 446
BSNT_01398 447 CGCTGTGCTCGGGCCAAATATCGGAAGCTTTCTGCTTGATTGGACCGGGT 496
.||.||.|||||.||.||||||||.||||||.||||||||...|||||||
RBAM_008510__ 447 GGCCGTCCTCGGACCGAATATCGGGAGCTTTTTGCTTGATGTAACCGGGT 496
BSNT_01398 497 CTTGGCATTGGCTATTTTTGATTAATTTGCCGATTGCCG-TGCTATTGGT 545
|.|||||||||||.||.||||||||..|||||||||||| .||| |||||
RBAM_008510__ 497 CGTGGCATTGGCTGTTCTTGATTAACCTGCCGATTGCCGCCGCT-TTGGT 545
BSNT_01398 546 TGTTTTCGGCTCATACTTTATCGCGGAAACAAAAGCACCTGAAGCTAAGC 595
|||.|.||||...|..||||||||.|||||.||||..|||||.||.||.|
RBAM_008510__ 546 TGTGTGCGGCGGTTTGTTTATCGCTGAAACGAAAGAGCCTGAGGCGAAAC 595
BSNT_01398 596 GCCTCGATGCGGCCGGAATCTTCCTTCTGTCCCTGTCGATTTTAGCCGTG 645
|.||.||....|||||.|...|.||.|||||.||..||||.||| .|.||
RBAM_008510__ 596 GGCTTGACCTCGCCGGCACAATGCTGCTGTCTCTTGCGATCTTA-TCTTG 644
BSNT_01398 646 -ATGTACGGCATGACGAACCTTGACGGGGTAAATCTCTTACACAGCTTGG 694
|||..|||.||.|||||.||.||.||||..||.||.|.|.|.|||.|
RBAM_008510__ 645 TATGATCGGTATCACGAATCTCGATGGGGCGAAGCTGTCAGAAAGCAT-- 692
BSNT_01398 695 GGAATCCGG------AGGTTTATGGATGTATTATTTTTGGCA-------T 731
||| || ||||.||.|| |||| .||||||.| |
RBAM_008510__ 693 --AAT--GGACGTAAAGGTATACGG--GTAT--CTTTTGGGAGCTGCACT 734
BSNT_01398 732 ACTCTGTTTTGCAGC-GCTTA---TCTCGTATGAAAAGAGAGTTGAAATG 777
.|||| ||.||..|| ||||| || ||||||.|.|||||||..
RBAM_008510__ 735 TCTCT-TTCTGGTGCTGCTTAAGGTC------GAAAAGCGGGTTGAAAAC 777
BSNT_01398 778 CGAGGAGGCGATCCCATTTTGGCGTATTCTCTGCTGCGAAACCATATGTT 827
|||||.||||||||.|||.|.||.||.||.|||||||.|||..|..||||
RBAM_008510__ 778 CGAGGGGGCGATCCGATTCTCGCCTACTCGCTGCTGCAAAATAAAGTGTT 827
BSNT_01398 828 TCAGCGCACGCTTATCATCGGTTTGTTATCCGGGGGGCTCTTGGCGGCAG 877
|||..|.|||||..|||||||.||.|||||.||.|||||..|.||.||.|
RBAM_008510__ 828 TCAATGGACGCTCGTCATCGGATTTTTATCGGGAGGGCTGCTCGCTGCGG 877
BSNT_01398 878 TCATTTTTATCCCGTCATATGTCGAGCAGTATTTGGGTGTCCCTGCCGCA 927
||||||||||.||.||.||||..|||||.||||||...||..|.||.|..
RBAM_008510__ 878 TCATTTTTATTCCTTCTTATGCGGAGCAATATTTGCACGTATCGGCGGAG 927
BSNT_01398 928 AAAGCAGGCTATTGA----------------------------------- 942
|||||.||.|||||.
RBAM_008510__ 928 AAAGCGGGTTATTGGATGACGCCGCTCGCGTTGGCGTCAGGCATCGGAGC 977
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 978 GTGGCTCGGCGGGGCGATCACGGATAAAAAAGGTCCGGTCTTTTCCGCGG 1027
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1028 TTGTATCAGGCGCCATCGCATTTGCAGGCTTCAGCCTGTTTCCGTTATGG 1077
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1078 GTGACGGATAAATGGGAATTTGTCACAGCGAGTGTCATTGCGGGGATCGG 1127
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1128 TTTCGGATTTCTGCTTGGGGCTCCGCTGAATGTGCTTGTATCAGAAACGG 1177
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1178 CGGGCCAAAACAAAGGAACAGCGCTCGGCACGCTGTCACTCGTAAGGCAG 1227
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1228 GTCGGGCTGACGCTCGCTCCGGCTTTATATGCCGGCTTCATTACAGCGGG 1277
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1278 CTTTGACCGGATCGGAGATGACATCAAAAACCGTTTAGCGAAAAGCGGCA 1327
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1328 TTCCCGCTGATCAGGCGCAAATGCCCGACATCGGCGGCGGACTTTCTTCG 1377
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1378 TTGCAGGAGCAGGTAAGCCGAATCCCCATTCCCGCCGTCAAAAAAGCGGT 1427
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1428 TTCTGATGCAATTGAAGCGGGCATTGCCAGCGGCTACCACCATCTTTATA 1477
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1478 CGGCAGCCGCCGTCATTTCATTATGCACGATTGTGTCTGCGGCGGTTTTG 1527
BSNT_01398 942 -------------------------------------------------- 942
RBAM_008510__ 1528 GCGTATTTCCGGAAGCCGGCATCCTCTAAGACAGATGCCAGCCCATCCGC 1577
BSNT_01398 942 ---------------- 942
RBAM_008510__ 1578 CGGGAAAGCTCAGTAA 1593
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