Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01401 and RBAM_008520

See Amino acid alignment / Visit BSNT_01401 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:06
# Commandline: needle
#    -asequence dna-align/BSNT_01401___yfiV.1.9828.seq
#    -bsequence dna-align/RBAM_008520___yfiV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01401___yfiV-RBAM_008520___yfiV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01401___yfiV-RBAM_008520___yfiV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01401___yfiV
# 2: RBAM_008520___yfiV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 499
# Identity:     371/499 (74.3%)
# Similarity:   371/499 (74.3%)
# Gaps:          32/499 ( 6.4%)
# Score: 1383.0
# 
#
#=======================================

BSNT_01401___      1 ATGGAATATAATTTACACGATACAACAGTATTAAACGAAAACATTCTTTC     50
                     |||||.||||||.|.||.||||||||||||||||.||...|.|||.||||
RBAM_008520__      1 ATGGATTATAATCTGCATGATACAACAGTATTAAGCGGCGATATTTTTTC     50

BSNT_01401___     51 ATCGGAGGAACGGGAAATATGGGTGCTCTATATGAAAGTCTTAACGTCCG    100
                     ..|.|||||||||||.||.||||||||.||.||||||||..|.||.||.|
RBAM_008520__     51 TCCTGAGGAACGGGATATTTGGGTGCTGTACATGAAAGTGATGACATCGG    100

BSNT_01401___    101 CCGGCCTCGGTGATGTGTCCGAGTGGATGAAGCTGGATATGAGCATGCCG    150
                     |.||.||||||||||||||.||||||||||||||.|||||||||||||||
RBAM_008520__    101 CGGGGCTCGGTGATGTGTCGGAGTGGATGAAGCTTGATATGAGCATGCCG    150

BSNT_01401___    151 CAAATGAAAGTGCTGATGCTATTAAACAACCATGGAACATTGAAAGTGAG    200
                     ||||||||||||||||||||..|.||||||||.||.||..|.||.|||||
RBAM_008520__    151 CAAATGAAAGTGCTGATGCTTCTGAACAACCACGGGACGCTTAAGGTGAG    200

BSNT_01401___    201 CGACATTGCTGAAAAAATGGGGGCTTCCCTGTCCAATACAACTGGGCTGC    250
                     .|||||.||.||.||||||||.||||||||.||.|||||.||.|||||||
RBAM_008520__    201 TGACATAGCGGAGAAAATGGGCGCTTCCCTTTCAAATACGACGGGGCTGC    250

BSNT_01401___    251 TTGACCGCCTTGAGAAATCAGGGTTTGTCAAACGCTCACATTCTGAAGAG    300
                     |||||||..|.||.||||||.|.||..|.|.||||.|.|..||.|||||.
RBAM_008520__    251 TTGACCGTTTAGAAAAATCATGTTTCATTACACGCGCTCCGTCAGAAGAA    300

BSNT_01401___    301 GACCGCCGCTCTGTAGTTGTTCAGTTGACAGAAAATGCGAAAAAGATTTT    350
                     ||||||||.||.||.||.|||||.||.||.|||||.||||||.|.|||||
RBAM_008520__    301 GACCGCCGTTCAGTCGTCGTTCAATTAACGGAAAACGCGAAAGATATTTT    350

BSNT_01401___    351 CCGGGGTTTGTATGAAAAAGGCCACCTGAAATTGAAGCGTTCATTAGA--    398
                     |||..|..|.|||.|||||||.||..|.|||||||||||||||||.||  
RBAM_008520__    351 CCGCAGCCTTTATCAAAAAGGACATGTAAAATTGAAGCGTTCATTGGAAA    400

BSNT_01401___    399 -GCTG-CTGTCCCCTGAAGAAAAGCAGGCTGT--TTCCGAAGGGCTGTCT    444
                      |||| |||    ||||||||||.||..|.||  .||  |||||||..|.
RBAM_008520__    401 CGCTGACTG----CTGAAGAAAAACAAACGGTCAATC--AAGGGCTTGCC    444

BSNT_01401___    445 ATCCTTT--CAAGAGC--------ATTAGAAAAAGCGAAAAAAGAATAA    483
                     ||  |||  |||||||        .||..|||.||.||.|.        
RBAM_008520__    445 AT--TTTGGCAAGAGCGCTTGATTCTTCCAAACAGGGATAG--------    483


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