Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01421 and RBAM_008610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01421___yfhI.1.9828.seq
# -bsequence dna-align/RBAM_008610___yfhI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01421___yfhI-RBAM_008610___yfhI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01421___yfhI-RBAM_008610___yfhI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01421___yfhI
# 2: RBAM_008610___yfhI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1203
# Identity: 927/1203 (77.1%)
# Similarity: 927/1203 (77.1%)
# Gaps: 12/1203 ( 1.0%)
# Score: 3506.5
#
#
#=======================================
BSNT_01421___ 1 TTGAGTATCAAAA------ACCCATCTGTAAAATTTATTATATTTGTTCT 44
||||.|||||||| |.|||||.||.|||||.||.||.||||||.|
RBAM_008610__ 1 TTGAATATCAAAATGAAACAGCCATCAGTGAAATTAATGATTTTTGTTTT 50
BSNT_01421___ 45 TATGATTTGCACATTTTCAATCGGCTATACAGAATACGCGGTGATGGGTA 94
.|||||||||||||||||.|||||.|||||.|||||.||.||.|||||||
RBAM_008610__ 51 AATGATTTGCACATTTTCCATCGGGTATACGGAATATGCTGTCATGGGTA 100
BSNT_01421___ 95 TTTTGACGTCGATTGCCAATGACTTTCATATACAGGTTTCATCCGCAGGG 144
||.||||||||||||||.||||||||||||||||.||.||.||.|| |||
RBAM_008610__ 101 TTCTGACGTCGATTGCCGATGACTTTCATATACATGTATCTTCAGC-GGG 149
BSNT_01421___ 145 C-TTCTTGTCACGGCTTATGCGGCAAGCGTTTGTTTGACAGGGCCACTCG 193
| |.|||||.|||||.||.|||||.|||||.||..||||.||.||..|||
RBAM_008610__ 150 CATGCTTGTTACGGCGTACGCGGCGAGCGTCTGCCTGACGGGCCCGATCG 199
BSNT_01421___ 194 TCACCATCATTTCCGTCAAGCTTCCGAGAAAGCCTGTGCTTCTTGGGCTT 243
|.|||||.||..|.||.|||||.||.||||||||.|||||.||.|||.|.
RBAM_008610__ 200 TAACCATTATCGCGGTTAAGCTGCCAAGAAAGCCGGTGCTGCTAGGGTTA 249
BSNT_01421___ 244 ATGGCGATATTTATCCTTTCAAACCTGATGAGCGCACTGGCGCCGAATTT 293
||||..||.||..|||||.|.|||||||||||||...|.||||||||.||
RBAM_008610__ 250 ATGGGCATCTTCGTCCTTGCCAACCTGATGAGCGTCTTTGCGCCGAACTT 299
BSNT_01421___ 294 TGCGGTATTGGCCATTTCAAGAATTTTATCTGCGTCCATTCACGGCGCTT 343
.||.||..||||.|||||.|||||||||||.||.|||||.|||||.||||
RBAM_008610__ 300 CGCCGTGCTGGCGATTTCCAGAATTTTATCCGCATCCATCCACGGAGCTT 349
BSNT_01421___ 344 TCTTCGCGATTGCCATGGTATTCGCAAGTGAAATGGTTCCGCCGGAAAAG 393
|.||.|||||.||||||||.||.||.|||||||||||||||||.|||||.
RBAM_008610__ 350 TTTTTGCGATCGCCATGGTGTTTGCGAGTGAAATGGTTCCGCCTGAAAAA 399
BSNT_01421___ 394 CGTGCTGCAGCTGCTGCTTCAATGAACGGCGGACTGACAGTGGCTCTAAT 443
|||.|.||.||.||.|||||.||||||||||||.|.||.|||||.||.||
RBAM_008610__ 400 CGTTCCGCCGCCGCGGCTTCCATGAACGGCGGATTAACCGTGGCGCTGAT 449
BSNT_01421___ 444 GCTTGGTGTTCCATTCGGCTCTTATCTCGGAGATGTCCTGAATTGGAGAG 493
|||.|||||.||.||||||||||||.|.||.||||.|||.||.|||.|.|
RBAM_008610__ 450 GCTCGGTGTCCCGTTCGGCTCTTATTTAGGGGATGCCCTTAACTGGCGGG 499
BSNT_01421___ 494 CGGTGTTTTCCATCATTACGGCTCTTGGTGTCATCGGATTTTTAGGCCTT 543
|.||.||||.|||.|||.|.|.|.|.||..|.|||||..|..|.||.||.
RBAM_008610__ 500 CCGTCTTTTTCATTATTTCCGTTTTAGGCATGATCGGGCTGATCGGACTG 549
BSNT_01421___ 544 ATGGCT-GCCGTGCCGAACAGAAAACCAAAAGTGATCCCAATGCTTATGA 592
|| ||| |.|||.||||||.|.|||||.||||||||.||.|||||.||||
RBAM_008610__ 550 AT-GCTGGTCGTACCGAACCGGAAACCGAAAGTGATTCCGATGCTGATGA 598
BSNT_01421___ 593 ATGAGTGGGGGGTTTTTAAACACAAACAAGTGCTGTTTTCCTTCGCGATT 642
||||.|||.|.||.|||||.||.|||||||||.|.||||||||.|||||.
RBAM_008610__ 599 ATGAATGGAGTGTCTTTAAGCATAAACAAGTGATTTTTTCCTTTGCGATC 648
BSNT_01421___ 643 ACCATTTTAGGCTATTCCGGTGTCTTTATCGCCTACACCTTTATCGAACC 692
||||||.|.|||||.||.||.||.||||||||.|||||.|||||.||.||
RBAM_008610__ 649 ACCATTCTCGGCTACTCAGGCGTATTTATCGCTTACACGTTTATTGAGCC 698
BSNT_01421___ 693 CATTTTAAGGCATTCAGCCGGATTCAGCACGGTTGGCATTACAGGTGCTC 742
.||||||||..|||||||.||.|||.||||.||.|||||.||||||||..
RBAM_008610__ 699 GATTTTAAGAGATTCAGCGGGGTTCGGCACAGTCGGCATCACAGGTGCGT 748
BSNT_01421___ 743 TCTTTGCGTATGGATTGGGAGGCGTTGCCGGGAATTTCTTTGCTGGAAAA 792
|.|||||.||.||..|.||.||.||.||.|||||||||||.||.||.|||
RBAM_008610__ 749 TATTTGCCTACGGTCTCGGCGGAGTGGCGGGGAATTTCTTCGCGGGGAAA 798
BSNT_01421___ 793 GTACCGCTGCCTTTGCTGACTCGGACGATGATCGGCGTAATGATCGGTTT 842
||.|||||.....|||||||.||.|||||||||||.||.||||||||.||
RBAM_008610__ 799 GTGCCGCTCAAACTGCTGACACGCACGATGATCGGTGTGATGATCGGCTT 848
BSNT_01421___ 843 AATCGGTGTTCTGGCTGTATTTCCTTACATCGCCATTTACCCGGCTGCAG 892
.|||||.||..||||..|.||.|||||.|||||..|||..||.||.||.|
RBAM_008610__ 849 GATCGGCGTCTTGGCGATTTTCCCTTATATCGCTGTTTTTCCCGCCGCCG 898
BSNT_01421___ 893 CCATTGTGGCAACGTTCCTATTCGGGGCATGCGCATTCGGCACGCCGCCT 942
|||||...||.||.||..|||||||.|||||.||.||||||||||||||.
RBAM_008610__ 899 CCATTTCAGCGACATTTTTATTCGGCGCATGTGCGTTCGGCACGCCGCCG 948
BSNT_01421___ 943 CTTCTGCAAACAAAGGTCATTTCCTCATCTGAGGGCGGCACAACCATTGC 992
|||.||||.||.|||||.|||||.||.|||||...||||||.||.||.||
RBAM_008610__ 949 CTTTTGCAGACCAAGGTTATTTCTTCCTCTGAAAACGGCACGACAATCGC 998
BSNT_01421___ 993 CGCAGCTGTCAGCGTATCAGCATTTAACCTTGCCAATGCCCTTGGTGCAT 1042
|||.||.||.|||||.||.||.||||||||.||.||.||.||.||.||.|
RBAM_008610__ 999 CGCTGCGGTGAGCGTTTCCGCCTTTAACCTGGCAAACGCGCTCGGCGCCT 1048
BSNT_01421___ 1043 GGATCGGCGGAATGATTTTAAACGGAACAGGCTCTTATTCCTGGCTGTTT 1092
|||||||||||.|||||.|....|||||.||.|||||.||.|||||||||
RBAM_008610__ 1049 GGATCGGCGGATTGATTCTCGGGGGAACGGGATCTTACTCATGGCTGTTT 1098
BSNT_01421___ 1093 GCAGGCGGTGCGCTTATGACTGCATGCGGACTTGTGCTTTCTACCTTCGC 1142
||.|||||||||||.|||||.||...|||.|||||||||||.||.|||||
RBAM_008610__ 1099 GCCGGCGGTGCGCTGATGACGGCTCTCGGCCTTGTGCTTTCCACGTTCGC 1148
BSNT_01421___ 1143 ACACTTATCAGAAAAGAAGAG-CGTCTACGAATATCAAGTCAATAAAGGG 1191
.||..|.||.||.||||| || .||.||.|||||.|||||..|||||||.
RBAM_008610__ 1149 TCATCTGTCTGAGAAGAA-AGATGTTTATGAATACCAAGTGCATAAAGGA 1197
BSNT_01421___ 1192 TAA 1194
|||
RBAM_008610__ 1198 TAA 1200
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