Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00405 and RBAM_008620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_00405___ybfJ.1.9828.seq
# -bsequence dna-align/RBAM_008620___ybfJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00405___ybfJ-RBAM_008620___ybfJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00405___ybfJ-RBAM_008620___ybfJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00405___ybfJ
# 2: RBAM_008620___ybfJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 445
# Identity: 251/445 (56.4%)
# Similarity: 251/445 (56.4%)
# Gaps: 101/445 (22.7%)
# Score: 633.5
#
#
#=======================================
BSNT_00405___ 1 ATGTATTCAACAATATTCAATATTGGGCAAATCAATAAATACAGCAAACT 50
.|||||||.||||.||||||||||||.|||||||||||
RBAM_008620__ 1 GTGTATTCGACAACATTCAATATTGGTCAAATCAATAA------------ 38
BSNT_00405___ 51 AGCCATATTCATGTCTATTTTG--------TTTTTATGCGGGTGCAGTTC 92
||| |.||..|.|||.|.|.| .||||||||||.|||.| |
RBAM_008620__ 39 AGC--TTTTGTTTTCTTTCTCGCGGCGGCCGTTTTATGCGGATGCGG--C 84
BSNT_00405___ 93 ---GCAGACGCATTCTTC--TCAAAAAGAAACGACTATT-CCTGTCACTC 136
||.|||| ||||..| .|||||| |..||| ||.||.||.|
RBAM_008620__ 85 AAAGCGGACG-ATTCCGCCGCCAAAAA------AGCATTGCCCGTTACGC 127
BSNT_00405___ 137 TTCATGTGGAGGATGC-------TAAGGGGCTGCCGGTCGAAGGGGTTCA 179
|.|||||.|||||||| |.|..|||.||||||
RBAM_008620__ 128 TCCATGTTGAGGATGCAGACGGTTCACCGGCGGCCGGT------------ 165
BSNT_00405___ 180 AGTGACGAT-----TG-TCAAAGCGCCCTCTTCAGATGAGGAGCCGAGTA 223
||||||.| || |.||||||.|....||||||.|..||||||.||
RBAM_008620__ 166 -GTGACGGTCACCGTGATGAAAGCGGCGGAGTCAGATCATCAGCCGAATA 214
BSNT_00405___ 224 CAGAGATTGGTGAGATACTCGGTAAAACAGACAAAAACGGAGATATCAAA 273
.|||....||.||||||.|.||.||.||.||..|..||||.||.||...|
RBAM_008620__ 215 TAGACCGCGGAGAGATAATAGGCAAGACTGATCACCACGGCGAGATTGCA 264
BSNT_00405___ 274 TGGGATACTGGCAGAAAAGGCGATTACTCAGTCGCATT-------GACGA 316
|||.|.|..|||...|||||....||..|.||||..|| ||||.
RBAM_008620__ 265 TGGAAAAGCGGCGCGAAAGGAACCTATGCCGTCGTTTTTGAAAAAGACGG 314
BSNT_00405___ 317 AGGGTGAAACATCAGTAACCCATCAGATCTCGTTAACAGAG---GATATG 363
|| .|.|.|.|||||...|.||.||.|||.|.||| |||
RBAM_008620__ 315 AG-------TACCGGAAACCCGGAATATTTCCTTAGCCGAGAGTGAT--- 354
BSNT_00405___ 364 AAA--------GATCATGCCATTCCATTAGTCTTCAAAGAATAG- 399
||| ||||| .||||.|| ||.|||.||| |
RBAM_008620__ 355 AAACATACGGTGATCA--GCATTACA------TTGAAACAAT-GA 390
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