Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01427 and RBAM_008670

See Amino acid alignment / Visit BSNT_01427 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:08
# Commandline: needle
#    -asequence dna-align/BSNT_01427___yfhL.1.9828.seq
#    -bsequence dna-align/RBAM_008670___yfhL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01427___yfhL-RBAM_008670___yfhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01427___yfhL-RBAM_008670___yfhL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01427___yfhL
# 2: RBAM_008670___yfhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 386
# Identity:     219/386 (56.7%)
# Similarity:   219/386 (56.7%)
# Gaps:         103/386 (26.7%)
# Score: 528.5
# 
#
#=======================================

BSNT_01427___      1 ---ATGACGGATTTAGTCGGCGGAGGGCTTATGATCATTGCG---GGCAT     44
                        ||.|.||   ||.|||||   ||.|||.||||...||||   |||||
RBAM_008670__      1 ATGATAATGG---TAATCGGC---GGCCTTCTGATGGCTGCGGCCGGCAT     44

BSNT_01427___     45 ACTGATCAAACTGTTTCCTCCCAAATCGATCAACAGTGTGTACGGATACA     94
                     ..|..|||.|.|.|||||.||.||.|||||||||||..||||||||||..
RBAM_008670__     45 TTTAGTCACATTTTTTCCGCCGAAGTCGATCAACAGCCTGTACGGATATC     94

BSNT_01427___     95 GAACGAGACGATCAATGTCAGATCAAAGATT----ATGGAATGAAGCGAA    140
                     |.||||..||.||.|||.|.|||    ||.|    .|||||.||||..||
RBAM_008670__     95 GGACGAAGCGCTCTATGGCGGAT----GAGTCGCAGTGGAAAGAAGGCAA    140

BSNT_01427___    141 CCGTTACAGTGC-ATCATTAATGATCCTG-TCAGGCTTGGTGATT---GC    185
                     .||.|.|||||| .|| .|.|||||..|| ||.|.|||    |||   ||
RBAM_008670__    141 TCGATTCAGTGCGCTC-CTCATGATTTTGTTCGGCCTT----ATTTCGGC    185

BSNT_01427___    186 GGGA-ATGGGTTTGCTGCTGGGATCAAACTTGTTTATTCTTCAGCTTATC    234
                     ||.| .|||.|||||    |||  ||..||             |||||||
RBAM_008670__    186 GGCAGCTGGATTTGC----GGG--CAGCCT-------------GCTTATC    216

BSNT_01427___    235 CTGCTGATT--GCCG-----CCTG--TGTT------ATAACATTTATGCT    269
                     |.|||||.|  ||||     ||||  .|||      .|||.|||.||..|
RBAM_008670__    217 CGGCTGACTCAGCCGTTCGCCCTGATCGTTCAGGCCGTAATATTGATTGT    266

BSNT_01427___    270 GA-CGGAGAAAAGGCTGAAAATCATGACG----CACAGTCAAGGAGGAGA    314
                     || |.|.|.|    |||   |||||  ||    .||||  ||  ||.|||
RBAM_008670__    267 GATCAGCGTA----CTG---ATCAT--CGTCTTAACAG--AA--AGAAGA    303

BSNT_01427___    315 TAGAA------GTGGACGGAGTTAA-----------    333
                     |.|||      |.||| ||||  ||           
RBAM_008670__    304 TTGAAACAAACGGGGA-GGAG--AATCGATGAATGA    336


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