Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01509 and RBAM_009160

See Amino acid alignment / Visit BSNT_01509 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:11
# Commandline: needle
#    -asequence dna-align/BSNT_01509___ygaO.1.9828.seq
#    -bsequence dna-align/RBAM_009160___ygaO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01509___ygaO-RBAM_009160___ygaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01509___ygaO-RBAM_009160___ygaO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01509___ygaO
# 2: RBAM_009160___ygaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 517
# Identity:     330/517 (63.8%)
# Similarity:   330/517 (63.8%)
# Gaps:          92/517 (17.8%)
# Score: 1016.5
# 
#
#=======================================

BSNT_01509___      1 ATGAGCATGAAAACAAAAGCAGCTTTTCACCTTGTTTTAT-----TTGGC     45
                     |||||..||||||.||||||...|||||||||||...|.|     |||||
RBAM_009160__      1 ATGAGTTTGAAAAGAAAAGCGTGTTTTCACCTTGCACTCTACGGATTGGC     50

BSNT_01509___     46 CTTGCATGCTGGGCGCTGATTTCATACTTT---GAAGC------------     80
                     |     ||||||.||||.|||||   ||||   |||||            
RBAM_009160__     51 C-----TGCTGGACGCTTATTTC---CTTTATGGAAGCGGCGCCGCGGAT     92

BSNT_01509___     81 --CTCAGAAGACATAGCATCTTTTTTCGGCACAAA--GAGCGGCGGGA-T    125
                       |||||              ||||||    ||||  |||    |||| .
RBAM_009160__     93 CGCTCAG--------------TTTTTC----CAAACGGAG----GGGAGC    120

BSNT_01509___    126 GGT--ATTTGATTTAAACCTCACTCCCTTTATTCTGTTT---GT---TGC    167
                     |||  ||||||..|.||..|||||||.|||.|.||||||   ||   |||
RBAM_009160__    121 GGTTCATTTGAGCTGAATATCACTCCGTTTCTGCTGTTTACCGTTTGTGC    170

BSNT_01509___    168 GGCGTCTGCGGTTTATTTGT-CCTTACAGAAAAA---AAGCCGCCCTGCC    213
                     .||.|    .||.|||.|.| ||..|.|||||||   ||.|      |.|
RBAM_009160__    171 CGCAT----TGTATATCTATGCCGAAAAGAAAAAGCGAAAC------GGC    210

BSNT_01509___    214 AGAAAGCAGCTACTTCTGCCTGATGAGTTTGAAGAGCAGGATGAAAGAGA    263
                     |.||||||....|||.|.||.|||||.|||||.||.||||||||||||||
RBAM_009160__    211 AAAAAGCACAGGCTTGTACCCGATGAATTTGAGGAACAGGATGAAAGAGA    260

BSNT_01509___    264 GCAGATGATGACGGCAAAAGCATGCCGCGCGTCATATATCGCTGTCTACT    313
                     .|..|||||||||||.|||||.|||||..|.||.||||||||.||.||||
RBAM_009160__    261 ACGAATGATGACGGCTAAAGCTTGCCGTTCCTCGTATATCGCCGTTTACT    310

BSNT_01509___    314 TCTCGCTGCCTGCCGCAGCGGTTCTTCTCATTTTTTATCCGCTATTTCAA    363
                     ||||..||||.||||||||.|||||.||..|.|||||||||||..||||.
RBAM_009160__    311 TCTCATTGCCGGCCGCAGCCGTTCTGCTTTTGTTTTATCCGCTGATTCAG    360

BSNT_01509___    364 TCGCGCATTCCGTTTTTCCCTATTATTATTG-TGTTTATCATCATGATCA    412
                     .|||...|.||.|||||.||.|||.|| ||| |.||.||..|.|||||.|
RBAM_009160__    361 CCGCATCTACCCTTTTTTCCGATTCTT-TTGATTTTCATTCTGATGATGA    409

BSNT_01509___    413 TCCAGCACCTTT--CCTACGTCATCTCTTTCAAGAAAAACGAAAAAAACT    460
                     |.|||||  |||  |.||.||..||.||||..|.||..|||..|||||||
RBAM_009160__    410 TTCAGCA--TTTGGCTTATGTTTTCACTTTTCATAAGCACGGCAAAAACT    457

BSNT_01509___    461 CCGGCGCGCTGTAA---    474
                     ||||      .|.|   
RBAM_009160__    458 CCGG------TTCATGA    468


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.