Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01519 and RBAM_009240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:12
# Commandline: needle
# -asequence dna-align/BSNT_01519___yhbF.1.9828.seq
# -bsequence dna-align/RBAM_009240___yhbF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01519___yhbF-RBAM_009240___yhbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01519___yhbF-RBAM_009240___yhbF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01519___yhbF
# 2: RBAM_009240___yhbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity: 469/775 (60.5%)
# Similarity: 469/775 (60.5%)
# Gaps: 131/775 (16.9%)
# Score: 1294.0
#
#
#=======================================
BSNT_01519___ 1 ATGGA---GACAACAAAACTGGGAAATTTAAAATTATATGGCGCTGGGCA 47
||||| |||||.||||.||.|..||||||||.|.||.||.||.||.||
RBAM_009240__ 1 ATGGAAACGACAAAAAAATTGAGTCATTTAAAAATGTACGGAGCCGGACA 50
BSNT_01519___ 48 TGCCGCAGGAGGCGCGTATCACAATGTCAGCATCAAAGGAGAAGGTGTAG 97
.|||.|.||.|||.|.|||||.|||||.|||||.|||||.|||||....|
RBAM_009240__ 51 CGCCTCCGGCGGCTCCTATCAAAATGTAAGCATTAAAGGGGAAGGAACTG 100
BSNT_01519___ 98 TTGGAGAAGGGCT-----GTCTGCTGTAGGATGCCGCATATACGGAACGG 142
|.||.|||||.|| | ||.|.|.|||||.||||.|||.||||
RBAM_009240__ 101 TCGGCGAAGGACTTCAAAG-----TGAACGCTGCCGGATATTCGGTACGG 145
BSNT_01519___ 143 GCCTTTTTCTCGGAAAAGCAGAGACTGAGC-GGCTGCGTGTGCTCGGAGA 191
|.||||||||||||.|.||.|||| |.|.| |||||....|..|||||||
RBAM_009240__ 146 GACTTTTTCTCGGAGATGCCGAGA-TCAACAGGCTGAAAATTTTCGGAGA 194
BSNT_01519___ 192 AAGTGAATGTAAAGGCGATCTGACAGC-----CGGCAAA----ATCAATA 232
...||||..|..|||.|||.|..|||| |.||||| |||
RBAM_009240__ 195 GCATGAAGTTGCAGGAGATTTATCAGCACGTTCAGCAAATGTGATC---- 240
BSNT_01519___ 233 TATATGGGATAATGAAAGTCAGCGGCTCACTTCAATTTGATCGATTC--- 279
||.|.|.|||||||..||||||| || || ||.|||
RBAM_009240__ 241 -----GGCACATTGAAAGTTGGCGGCTC----CA---TG--CGTTTCGCC 276
BSNT_01519___ 280 ------AATCTGAAAGGCCAGACTGAAATTGG---CGGGAATATG--ACT 318
|..||||||||.|...|||||||||| |||| | .|.
RBAM_009240__ 277 ACGATGAGGCTGAAAGGACTTGCTGAAATTGGCAACGGG-----GCCGCG 321
BSNT_01519___ 319 GGAGAATCCTGCGATGTGAAAGGGAAGCTTAGCGTAAAAGGTGATTGTGA 368
|||||....||..||.|.|||||.|..||.|..||....||.|||||.||
RBAM_009240__ 322 GGAGAGCAGTGTCATATAAAAGGCAGTCTCACAGTCGGCGGCGATTGCGA 371
BSNT_01519___ 369 AACAGAAATGTTCCATGTCACAGGCTGTGTTGATGTATCGGGGTTATTAA 418
.||.||..||.|.|||||.|||||.|||.|..||||..||||.||.||||
RBAM_009240__ 372 GACGGAGCTGCTTCATGTAACAGGATGTATCAATGTGGCGGGATTGTTAA 421
BSNT_01519___ 419 ATTCGGGTGAGATCAAGCTGGGATTGAGCCATGATATAAGCCATGTGCAG 468
|..||||.||.||.||..|....|||.|..||||...|||||..|||.|.
RBAM_009240__ 422 ACGCGGGGGACATAAACATCCATTTGCGTTATGACCGAAGCCGCGTGAAA 471
BSNT_01519___ 469 GAAATCGGCGGAACAACAATTACAGTGAAAAGACG----CGCGAGTTTTT 514
|||||||||||.|||.|.||.||.|| .||||| |.|| |||||.
RBAM_009240__ 472 GAAATCGGCGGCACATCGATCACCGT---CAGACGGAAACCCG-GTTTTC 517
BSNT_01519___ 515 TTAACCGGAAGAAAGTGAAGCTG-------ATC-GCCGATGTCATAGAAG 556
||||.|||| ||||.| .|| ||.||..|.||.||||
RBAM_009240__ 518 TTAAACGGA--------AAGCCGGCACGCTTTCTGCTGAATTGATCGAAG 559
BSNT_01519___ 557 GAGATCG-GGTTTATTTGGAGAATACCGAAGCGG-CAGTTGTCAGGGGAA 604
|.|| || ..|||||.|.||..|.||.||||||| || |.|||||.||.|
RBAM_009240__ 560 GGGA-CGCAATTTATCTCGAATACACGGAAGCGGACA-TCGTCAGAGGGA 607
BSNT_01519___ 605 AAGAAGTGATCATCGGGCCGGGATGCAGTATCGGAACAATTGAGTA-CGA 653
|..|.|||...|||||.|||||.||||..|||||||.|||.||||| |
RBAM_009240__ 608 AGCATGTGGAAATCGGCCCGGGCTGCAAAATCGGAAAAATCGAGTATC-- 655
BSNT_01519___ 654 AAACAAATATGAATGCGATCCGCATTCACAGATTAAAGAAAAAACAAAAC 703
|||||| ..|||.|..|.||| ||||||.| |||
RBAM_009240__ 656 AAACAA-----GCTGCAAATCTCAT------------GAAAAATC--AAC 686
BSNT_01519___ 704 TGT--AA------------------ 708
||| ||
RBAM_009240__ 687 TGTCCAAGAACATATTAAAATATGA 711
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