Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01524 and RBAM_009250

See Amino acid alignment / Visit BSNT_01524 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_01524___prkA.1.9828.seq
#    -bsequence dna-align/RBAM_009250___prkA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01524___prkA-RBAM_009250___prkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01524___prkA-RBAM_009250___prkA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01524___prkA
# 2: RBAM_009250___prkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1896
# Identity:    1572/1896 (82.9%)
# Similarity:  1572/1896 (82.9%)
# Gaps:           0/1896 ( 0.0%)
# Score: 6564.0
# 
#
#=======================================

BSNT_01524___      1 ATGGATATATTAAAGAAAATTGAACAGTACAGAGAGGAAGAGCAGCGGCT     50
                     ||||||||||||||||||||||||.||||||||||||||||||||||.||
RBAM_009250__      1 ATGGATATATTAAAGAAAATTGAAAAGTACAGAGAGGAAGAGCAGCGTCT     50

BSNT_01524___     51 GAAATGGGAAGGAACTTTCGCCGATTATTTGGAGATTATTAAAGAAAATC    100
                     .|||||||||||.||.|||||.||||||||||||||.||.||||||||||
RBAM_009250__     51 CAAATGGGAAGGGACGTTCGCTGATTATTTGGAGATCATAAAAGAAAATC    100

BSNT_01524___    101 CGATGGTCGCGCAATCTGCTCATTCTCGAGTTTTTAATATGATAAAAGAC    150
                     |..||||||||||.||||||||||||||.|||||||||||||||||||||
RBAM_009250__    101 CATTGGTCGCGCAGTCTGCTCATTCTCGCGTTTTTAATATGATAAAAGAC    150

BSNT_01524___    151 AGCGGGATAGAGGAAATTGACGGACGCAAGAAGTACAGTTTTTTTGACCG    200
                     |||||.||.|||||...||||||....||||..|||||.|||||....||
RBAM_009250__    151 AGCGGAATCGAGGAGGATGACGGTAAAAAGACATACAGCTTTTTCTCGCG    200

BSNT_01524___    201 CGAGCTGTTCGGGCTTGAAGAATCTCTGGAGCGTCTTGTGGAAGAGTATT    250
                     .|||||||||||.|||||.|||||||||||.||.||.|||||.||.||.|
RBAM_009250__    201 GGAGCTGTTCGGCCTTGAGGAATCTCTGGAACGGCTCGTGGAGGAATACT    250

BSNT_01524___    251 TTCATCCGGCTGCCAAACGTCTAGATGTCAGAAAGCGGATTCTATTGCTG    300
                     ||||.|||||||||||.||.||.|||||.|||||.||||||.||.|..||
RBAM_009250__    251 TTCACCCGGCTGCCAAGCGGCTCGATGTAAGAAAACGGATTTTACTATTG    300

BSNT_01524___    301 ATGGGGCCTGTGAGCGGCGGTAAATCCACGCTGGTCACGATGCTCAAAAA    350
                     |||||.||.||.||||||||.||.||.||.||.|||||.|||.|.|||||
RBAM_009250__    301 ATGGGACCCGTCAGCGGCGGAAAGTCAACTCTTGTCACCATGTTGAAAAA    350

BSNT_01524___    351 AGGTCTCGAAGCGTACACGCTGACAGATAATGGCGCTGTATATGCGATTA    400
                     |||.||.|||||.|||.|..|||||||.||.||||||||.||.||.||||
RBAM_009250__    351 AGGGCTTGAAGCCTACTCATTGACAGACAACGGCGCTGTTTACGCCATTA    400

BSNT_01524___    401 AAGGCTGCCCGATGCACGAGGACCCTCTACATTTAATCCCCCATCATTTA    450
                     ||||||||||||||||.||.||.|||||.|||.|.||.|||||||||.|.
RBAM_009250__    401 AAGGCTGCCCGATGCATGAAGATCCTCTCCATCTCATTCCCCATCATCTG    450

BSNT_01524___    451 CGCGATGACTTTTACAGAGAATACGGCATTAGAATAGAAGGAAGTCTTTC    500
                     |||||.|||||.|||||||||||||||||.|||||.||.||.||.|||||
RBAM_009250__    451 CGCGACGACTTCTACAGAGAATACGGCATCAGAATTGAGGGCAGCCTTTC    500

BSNT_01524___    501 TCCTTTAAATGTCATGAGGCTGGAGGAAGAGTACGGAGGAAGAATTGAGG    550
                     |||..|.|||||||||.||||.||.|||||||||||.||.||||||||||
RBAM_009250__    501 TCCGCTTAATGTCATGCGGCTTGAAGAAGAGTACGGCGGCAGAATTGAGG    550

BSNT_01524___    551 ATGTGAAGGTGGAGCGCATCTTCTTTTCAGAAGATAAGCGTACGGGAATT    600
                     ||||.|||||.||.||.||.|||||.||.||.|||||.|||||.|||||.
RBAM_009250__    551 ATGTAAAGGTTGAACGTATATTCTTCTCGGAGGATAAACGTACCGGAATC    600

BSNT_01524___    601 GGAACATTCAGTCCCTCTGATCCGAAATCTCAGGATATCGCCGATTTGAC    650
                     |||||.|||||.||.|||||.||||||||.||||||||||||||.|||||
RBAM_009250__    601 GGAACCTTCAGCCCGTCTGACCCGAAATCACAGGATATCGCCGACTTGAC    650

BSNT_01524___    651 GGGGAGTATTGATTTCTCAACAATCGCCGAGTACGGTTCAGAATCAGATC    700
                     |||||||||||||||.|||||.||.|||||.|||||.|||||||||||||
RBAM_009250__    651 GGGGAGTATTGATTTTTCAACGATTGCCGAATACGGCTCAGAATCAGATC    700

BSNT_01524___    701 CGCGCGCTTACCGGTTTGACGGAGAGCTGAATAAAGCGAACCGCGGGATG    750
                     ||||||||||.|||||||||||.||..|.|||||||||||||||||.|||
RBAM_009250__    701 CGCGCGCTTATCGGTTTGACGGTGAATTAAATAAAGCGAACCGCGGAATG    750

BSNT_01524___    751 ATGGAGTTTCAGGAGATGCTGAAATGTGATGAGAAATTTCTCTGGCATTT    800
                     ||||||||||||||.|||||||||||.|||||.||||||||.|||||..|
RBAM_009250__    751 ATGGAGTTTCAGGAAATGCTGAAATGCGATGAAAAATTTCTGTGGCACCT    800

BSNT_01524___    801 GCTTTCCTTGACACAGGAAGGGAATTTTAAAGCTGGGCGGTTTGCGTTAA    850
                     .||.||..|.||.||||||||||||||.|||||.||.|||||||||.|.|
RBAM_009250__    801 TCTGTCACTCACGCAGGAAGGGAATTTCAAAGCCGGACGGTTTGCGCTCA    850

BSNT_01524___    851 TTTCTGCTGATGAGCTGATTGTGGCTCACACGAATGAAACGGAGTATCGC    900
                     |.||.||.||.||..||.||||.||.||.|||||.|||||||||||.|||
RBAM_009250__    851 TCTCAGCCGACGAATTGGTTGTTGCGCATACGAACGAAACGGAGTACCGC    900

BSNT_01524___    901 TCATTTATTTCTAATAAGAAGAATGAAGCCCTGCACTCGAGAATCATCGT    950
                     ||.||||||.|.||||||||.|||||||||||.|||||.||.||||||||
RBAM_009250__    901 TCGTTTATTGCCAATAAGAAAAATGAAGCCCTTCACTCCAGGATCATCGT    950

BSNT_01524___    951 GATGCCGGTTCCTTATAATTTAAAAGTGTCAGAGGAAGAGAGAATTTATG   1000
                     ||||||.|||||||||||||||||.||||||||||||||..|.|||||||
RBAM_009250__    951 GATGCCTGTTCCTTATAATTTAAAGGTGTCAGAGGAAGAACGGATTTATG   1000

BSNT_01524___   1001 AAAAAATGATCGCTGAGAGCGATGTGGCGGATGTTCATATTGCCCCGCAT   1050
                     ||||||||||..||||.||.|||||..|.||.||.||.||.|||||.|||
RBAM_009250__   1001 AAAAAATGATTTCTGAAAGTGATGTTTCTGACGTACACATCGCCCCCCAT   1050

BSNT_01524___   1051 ACGTTGAAGGTCGCCGCGATGTTCTCAATCCTTACCCGGTTAAAGGAACC   1100
                     ||.||.||.||.|||||||||||.||.||..|.|||.||.|.||||||||
RBAM_009250__   1051 ACATTAAAAGTGGCCGCGATGTTTTCTATTTTGACCAGGCTGAAGGAACC   1100

BSNT_01524___   1101 GAAGCGGTCGGATATTGATCTGGTCAAGAAAATGAGACTGTATGATGGAG   1150
                     |||.||.||.|||||||||||.|||||.||||||||.||.|||||.||||
RBAM_009250__   1101 GAACCGCTCTGATATTGATCTCGTCAAAAAAATGAGGCTCTATGACGGAG   1150

BSNT_01524___   1151 AAAGTGTGGAAGGATATAATTCTGTCGACGTTGAGGATATGAAAAAAGAA   1200
                     ||||.||.|||||.||.|||||.||.||..|.|||||||||||.||.|||
RBAM_009250__   1151 AAAGCGTTGAAGGTTACAATTCCGTTGATCTGGAGGATATGAAGAAGGAA   1200

BSNT_01524___   1201 TATAATGATGAAGGTATGAGCGGCATTGATCCGCGGTACGTGATCAACCG   1250
                     |...||||||||||.||||||||.|||||.|||||.||.||.||||||||
RBAM_009250__   1201 TTCCATGATGAAGGAATGAGCGGAATTGACCCGCGCTATGTCATCAACCG   1250

BSNT_01524___   1251 GATATCTTCAACGATTATCAGAAAGAATATGGAATCGATTAATTCTCTCG   1300
                     .||.||.|||||.|||||||||||.||||||||||||||.|||||.||.|
RBAM_009250__   1251 CATTTCCTCAACAATTATCAGAAAAAATATGGAATCGATCAATTCGCTTG   1300

BSNT_01524___   1301 ATGTCCTTCGTTCCTTAAAAGAAGGTCTTGATCAGCACCCATCAATTTCA   1350
                     |.||.||.|||||||||||||||||.|||||.|||||.||.||.||.||.
RBAM_009250__   1301 ACGTGCTGCGTTCCTTAAAAGAAGGACTTGACCAGCATCCGTCGATCTCC   1350

BSNT_01524___   1351 AGCGAGGACAGGGAGCGGTATTTGAATTTTATTTCTGCCGCCCGCAAGGA   1400
                     ..||||||||..|||||||||.|||||||||||||.||||||.|.||.||
RBAM_009250__   1351 GCCGAGGACAAAGAGCGGTATATGAATTTTATTTCCGCCGCCAGGAAAGA   1400

BSNT_01524___   1401 ATATGACGACATTGCGAAAAAGGAAGTTCAAAAAGCGTTTGTGTATTCGT   1450
                     .||.||.|||||.||.|||||.|||||.||.||.|||||.||.|||||.|
RBAM_009250__   1401 GTACGATGACATCGCTAAAAAAGAAGTGCAGAAGGCGTTCGTCTATTCAT   1450

BSNT_01524___   1451 ATGAAGAATCAGCAAAAACACTTATGGACAATTACCTCGATAACGTAGAG   1500
                     ||||||||||.||.|||||.||.|||||||||||..|.|||||.||.||.
RBAM_009250__   1451 ATGAAGAATCCGCTAAAACTCTCATGGACAATTATTTAGATAATGTGGAA   1500

BSNT_01524___   1501 GCTTATTGCAATAAAAACAAGCTTCGTGATCCTTTGACAGGAGAGGAAAT   1550
                     ||.||.|||||||||||.|||||.||.||.||..||||.||.||.|||||
RBAM_009250__   1501 GCGTACTGCAATAAAAATAAGCTCCGCGACCCGCTGACGGGTGAAGAAAT   1550

BSNT_01524___   1551 GAACCCTGACGAAAAGCTGATGAGATCCATCGAAGAGCAGATCGGCATTT   1600
                     |||.|||||||||||.||||||||||||||.|||||||||||||||||||
RBAM_009250__   1551 GAATCCTGACGAAAAACTGATGAGATCCATTGAAGAGCAGATCGGCATTT   1600

BSNT_01524___   1601 CGGAAAACGCCAAAAAAGCGTTCCGCGAAGAAATTTTAATCCGCATCTCA   1650
                     |.||||||||.|||||||||||||||||||||||||||||||||||.||.
RBAM_009250__   1601 CAGAAAACGCGAAAAAAGCGTTCCGCGAAGAAATTTTAATCCGCATATCC   1650

BSNT_01524___   1651 GCCTATGCGAGAAAAGGCAAGCGGTTTGATTACAATTCCCATGAAAGACT   1700
                     ||||||||.||||||||.||.||.|||||.||.|||||.||.||||||||
RBAM_009250__   1651 GCCTATGCAAGAAAAGGAAAACGCTTTGACTATAATTCGCACGAAAGACT   1700

BSNT_01524___   1701 GCGTGAAGCTATTCAGAAAAAGCTGTTTGCTGATCTGAAGGATGTCGTTA   1750
                     .||.|||||.|||||||||||||||||.||.||..|.||.|||||.||.|
RBAM_009250__   1701 CCGCGAAGCGATTCAGAAAAAGCTGTTCGCAGACTTAAAAGATGTGGTGA   1750

BSNT_01524___   1751 AAATTACGACCTCTACAAAAACGCCGGATGAACAGCAGCTGAAAAAGGTA   1800
                     |||||||||||||.||.||||||||||||||.||||||||.||||||||.
RBAM_009250__   1751 AAATTACGACCTCAACCAAAACGCCGGATGAGCAGCAGCTTAAAAAGGTC   1800

BSNT_01524___   1801 AATGAAGTCGTGGCCCGTTTAATTGATGAGCACGGCTACAACTCGACGAG   1850
                     |||||.||.|||||..|.|||||.|||||.||||||||.||.|||||.||
RBAM_009250__   1801 AATGAGGTAGTGGCAAGGTTAATAGATGAACACGGCTATAATTCGACTAG   1850

BSNT_01524___   1851 CGCCAATGAGCTGCTGAAATATGTCGGCAGCCTGCTGAACCGATAA   1896
                     |||.|||||.||||||||.||||||||.|||.||.|.|||||.|.|
RBAM_009250__   1851 CGCTAATGAACTGCTGAAGTATGTCGGAAGCTTGTTAAACCGCTGA   1896


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