Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01532 and RBAM_009310

See Amino acid alignment / Visit BSNT_01532 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_01532___yhcC.1.9828.seq
#    -bsequence dna-align/RBAM_009310___yhcC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01532___yhcC-RBAM_009310___yhcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01532___yhcC-RBAM_009310___yhcC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01532___yhcC
# 2: RBAM_009310___yhcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 408
# Identity:     274/408 (67.2%)
# Similarity:   274/408 (67.2%)
# Gaps:          69/408 (16.9%)
# Score: 895.0
# 
#
#=======================================

BSNT_01532___      1 ATGGCCATTATTATAGCAATAATTGCTGCTGTCATTGTCATTGCGGCCCT     50
                     |||||||||||||||||..|.|||||||||||||||||.|||||....||
RBAM_009310__      1 ATGGCCATTATTATAGCGGTTATTGCTGCTGTCATTGTGATTGCACTTCT     50

BSNT_01532___     51 TATTACATTTAACGTCCGCAACGCCTCACCTGGAC-------CTGAGAAG     93
                     |||.|||||.||.|||||||.|.|.||..|.||||       |..|||||
RBAM_009310__     51 TATCACATTCAATGTCCGCAGCACTTCTGCAGGACAGGATGTCAAAGAAG    100

BSNT_01532___     94 CA-----AGAAGCAACTGATAGAATCGCACCTCCAGAAGA------GGAA    132
                     .|     ||||||    |||.|    ||| ||.|||..||      ||||
RBAM_009310__    101 AAAAGAGAGAAGC----GATCG----GCA-CTACAGCCGAACAGCCGGAA    141

BSNT_01532___    133 AAAAACGAAGCGCATTACCCTGCTGAAGCAAGGGCT--GCCGAGCATACG    180
                     ||         ||||.|.||.||.||.|  ||.|||  |||||||||.|.
RBAM_009310__    142 AA---------GCATGATCCGGCCGAGG--AGCGCTCAGCCGAGCATGCT    180

BSNT_01532___    181 CCATCCGTTGTCAAAAAC-GATTCTCC--------AAAAGAGAAGCGTGA    221
                     |||..|||||| ||||.| ||.|||||        ||||||        |
RBAM_009310__    181 CCAGTCGTTGT-AAAATCTGAATCTCCCCGTGAGAAAAAGA--------A    221

BSNT_01532___    222 CACAATGGGTGATGATATTTACAGGCAGGCGCTGCAAAAGTTTAAGCATT    271
                     .||||||||.||||||.|.|||.|.||||||||.||.|||||||||..||
RBAM_009310__    222 TACAATGGGCGATGATGTGTACCGTCAGGCGCTTCAGAAGTTTAAGACTT    271

BSNT_01532___    272 CTGATGA-AGTTCATGCAGAAGAAGAGGTCACTGAGGAAAGTGAC---AA    317
                     |||| || .|.|||.|.|..|.|.||  || ||   ||.||.|.|   ||
RBAM_009310__    272 CTGA-GACGGATCAGGAACCAAACGA--TC-CT---GATAGCGGCGGTAA    314

BSNT_01532___    318 AATGCAGGACCGCAGCTATCGTGATGCGCTGCTCTCTATGAAAAATAAGA    367
                     |||||||||..|||||||||||||||||||||||||..|.|||||.||.|
RBAM_009310__    315 AATGCAGGATAGCAGCTATCGTGATGCGCTGCTCTCCTTAAAAAACAAAA    364

BSNT_01532___    368 AAAAGTAA    375
                     |.||||||
RBAM_009310__    365 AGAAGTAA    372


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