Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01535 and RBAM_009330

See Amino acid alignment / Visit BSNT_01535 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence dna-align/BSNT_01535___yhcF.1.9828.seq
#    -bsequence dna-align/RBAM_009330___yhcF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01535___yhcF-RBAM_009330___yhcF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01535___yhcF-RBAM_009330___yhcF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01535___yhcF
# 2: RBAM_009330___yhcF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 386
# Identity:     272/386 (70.5%)
# Similarity:   272/386 (70.5%)
# Gaps:          28/386 ( 7.3%)
# Score: 942.0
# 
#
#=======================================

BSNT_01535___      1 ATGGACAATCAATTCCAATCCTCGAAACCGATTTATCTGCAGATCGCTGA     50
                     |||||.|||.||||.||.||.||.||.|||||||||||||||||.||.||
RBAM_009330__      1 ATGGAGAATGAATTTCAGTCATCCAAGCCGATTTATCTGCAGATTGCCGA     50

BSNT_01535___     51 TCAGATCTTTTATAGGCTGGTCAGGAAG-GAGCTGCTC-CCAGGAGACAA     98
                     ||...|.|.|||..|||||.|| .|||| ||||| .|| ||.||.|||||
RBAM_009330__     51 TCGTGTATATTACCGGCTGATC-CGAAGTGAGCT-TTCACCGGGGGACAA     98

BSNT_01535___     99 GCTTCCTTCAGTAAGAGAAATGGCGATTCAAACTAAGGTAAATCCCAATA    148
                     .||.||.||.|||||.||.|||||..|.||.|..||.||.|||||.||||
RBAM_009330__     99 ACTGCCGTCCGTAAGGGAGATGGCCGTACAGATGAAAGTGAATCCGAATA    148

BSNT_01535___    149 CAATTCAAAGAACGTACAGTGAGATGGAAAGGCTGGGTATTGTGGAGACA    198
                     |.||.|||||||||||||||||.||||||||||||||.||.||||||||.
RBAM_009330__    149 CGATACAAAGAACGTACAGTGAAATGGAAAGGCTGGGGATCGTGGAGACG    198

BSNT_01535___    199 AGAAGAGGTCAAGGGACGTTTATTACGGAAA-----AAGCAGAAATCGTA    243
                     ||||||||.||.||.||.|||||..||||||     .|.|.||||.||  
RBAM_009330__    199 AGAAGAGGACAGGGAACCTTTATAGCGGAAAGGTCCGATCTGAAAGCG--    246

BSNT_01535___    244 GACGAGCTGAAAGACAAGCTGACACGAGAGGTGCTGGAAGGCTTTGTCAA    293
                        |||||||||||||.||||||...|||.||..|..||.|||||.|..|
RBAM_009330__    247 ---GAGCTGAAAGACAGGCTGACTAAAGACGTTTTCAAACGCTTTATTCA    293

BSNT_01535___    294 GCAAATGAAAGAGCTGGGGCTAACGAAAGAGGAAATGGTAGAAGGGATTA    343
                     |.|||||...||||||||||||.|....|||||||||.|.||.|||||.|
RBAM_009330__    294 GGAAATGGCGGAGCTGGGGCTATCTCCTGAGGAAATGATCGACGGGATCA    343

BSNT_01535___    344 AAACATTCACAGAGGGAGGCTAA-------------    366
                     ||..||...|.|| |||.||.||             
RBAM_009330__    344 AACAATATGCGGA-GGAAGCAAACGATGAATCTTGA    378


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