Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01536 and RBAM_009340

See Amino acid alignment / Visit BSNT_01536 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence dna-align/BSNT_01536___yhcG.1.9828.seq
#    -bsequence dna-align/RBAM_009340___yhcG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01536___yhcG-RBAM_009340___yhcG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01536___yhcG-RBAM_009340___yhcG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01536___yhcG
# 2: RBAM_009340___yhcG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity:     502/775 (64.8%)
# Similarity:   502/775 (64.8%)
# Gaps:         116/775 (15.0%)
# Score: 1539.0
# 
#
#=======================================

BSNT_01536___      1 ATG----GAAATCAAGC--------------TAGAACATGTATCAAAAAA     32
                     |||    |.||.|||.|              |.||||..|||.|||||||
RBAM_009340__      1 ATGCGGAGGAAGCAAACGATGAATCTTGATTTTGAACGCGTAACAAAAAA     50

BSNT_01536___     33 ATACGGCCGCCATACG---GCCGTCAATGATGTGTCAATCACCCTATCAT     79
                     ||||||||||   |.|   ||.||||..|||||.|||.|..|..|.|| |
RBAM_009340__     51 ATACGGCCGC---AGGCTCGCGGTCAGCGATGTATCATTTTCATTGTC-T     96

BSNT_01536___     80 CCGG---------ACGGA--TTTATGGCCTGATCGGACCGAACGGCAGCG    118
                     ||||         |||||  ||||          ||.||||||||.||||
RBAM_009340__     97 CCGGGTAAAATCTACGGAATTTTA----------GGGCCGAACGGAAGCG    136

BSNT_01536___    119 GCAAGTCAACGACCCTGAAAATGATGGCTGGCCTTCTGTTTCCGACTTCA    168
                     |.||.|||||.||.||.||||||.|.||.||.|||..|||.|||||.||.
RBAM_009340__    137 GTAAATCAACAACGCTTAAAATGCTTGCCGGGCTTGCGTTCCCGACCTCG    186

BSNT_01536___    169 GGATTTGT--GAAAGTTGAT-GAAGA----GCAGGTTACG-AGAGAA-AT    209
                     ||....||  |      ||| |.|||    ||||  ||.| || ||| ||
RBAM_009340__    187 GGCGCCGTCCG------GATCGGAGACTGCGCAG--TAAGCAG-GAACAT    227

BSNT_01536___    210 GGTGCGTCAAACGGCTTATCTTACTGAGCTTGATATGTTTTATCCGCATT    259
                     |.||..||..|||||||||.|.||.||.|.||||||||||  |||||   
RBAM_009340__    228 GCTGTTTCGTACGGCTTATTTAACCGAACATGATATGTTT--TCCGC---    272

BSNT_01536___    260 TC------ACTGTTAAAGATATGGTGAATTTTTATCAGTCGCAGTTTCCT    303
                      |      ||.||....||||||.|.|..||||||||.|||||.||.||.
RBAM_009340__    273 -CCGGACGACCGTCGGTGATATGCTCACATTTTATCATTCGCAATTCCCG    321

BSNT_01536___    304 GATTTTCAAACAGAACAGGCTTATAAGCTATTGAATGAGATG-------C    346
                     ||||||||....|||.|.||..||||.|||||.|..||.|||       |
RBAM_009340__    322 GATTTTCAGCTGGAAAAAGCACATAACCTATTAACGGAAATGAATCTTTC    371

BSNT_01536___    347 AGCTGAATCCGGAAAAAAAGATCAAAAAGCTATCAAAAGGAAATCGGGGC    396
                     ||| |||.|      |.|||||.|||.||||.||.|||||.|..||||||
RBAM_009340__    372 AGC-GAAGC------AGAAGATAAAAGAGCTGTCCAAAGGCAGCCGGGGC    414

BSNT_01536___    397 CGGCTGAAAATCGTTCTTGCTTTAGCGAGACGGGCAGACGTCATCGTGCT    446
                     .||||||||||||||.|.||..|..|||||...|||..||||||..||||
RBAM_009340__    415 AGGCTGAAAATCGTTTTGGCCCTGTCGAGAAAAGCATCCGTCATTCTGCT    464

BSNT_01536___    447 TGATGAACCTTTTTCCGGGCTTGATCCGATGGTCAGGGATTCCATCGTAA    496
                     .|||||.||.|||||.||.|||||||||..||||||.||.||.||.||.|
RBAM_009340__    465 GGATGAGCCGTTTTCAGGTCTTGATCCGGCGGTCAGAGAATCGATTGTCA    514

BSNT_01536___    497 ACAGCCTTGTGTCGTACATTGATTTTGAGCAG-CAGATTGTCGTGATCGC    545
                     ||||.||.||.||.||.||||||||||| ||| |||||.|||||.|||||
RBAM_009340__    515 ACAGTCTCGTATCTTATATTGATTTTGA-CAGCCAGATCGTCGTCATCGC    563

BSNT_01536___    546 GACACATGAAATTGATGAAATTGAGACTTTGTTAGACGAAGTAATCATCC    595
                     .||.|||||.||.|..||.||.|||||..|||||||||||||.||..|..
RBAM_009340__    564 CACGCATGAGATCGGCGAGATAGAGACGCTGTTAGACGAAGTGATGGTTT    613

BSNT_01536___    596 TCGCCAATGGAGAAAA-AGTTGCGCAGCGTGAAGTAGAAGATATTCGTGA    644
                     ||...||.|| ||||| .|.||..|.|||.||.||.|||||.|||||.||
RBAM_009340__    614 TCATAAAAGG-GAAAATCGCTGAACGGCGCGAGGTCGAAGAAATTCGGGA    662

BSNT_01536___    645 ACAGGAAGGCATGTCTGTTTTGCAATGGTTTAAA----TCA---------    681
                     |||||||||.|||||.||..|||||||||..|.|    |||         
RBAM_009340__    663 ACAGGAAGGAATGTCCGTGCTGCAATGGTACAGAAGCGTCATGCAGGCGC    712

BSNT_01536___    682 --AAAATGGAAG-----TTTGCTAG    699
                       .||||.||||     ||  |||.
RBAM_009340__    713 ACGAAATAGAAGGGGGATT--CTAA    735


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01536 and RBAM_009340

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
