Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01537 and RBAM_009350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01537___yhcH.1.9828.seq
# -bsequence dna-align/RBAM_009350___yhcH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01537___yhcH-RBAM_009350___yhcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01537___yhcH-RBAM_009350___yhcH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01537___yhcH
# 2: RBAM_009350___yhcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 937
# Identity: 706/937 (75.3%)
# Similarity: 706/937 (75.3%)
# Gaps: 38/937 ( 4.1%)
# Score: 2596.5
#
#
#=======================================
BSNT_01537___ 1 ATGAAAACAGTGTTGGAATTGAAAAACGTGACTAAAAACATCAGAGGCCG 50
.||.||||.||.||.|||.||.||.|.||.|..||||..||.|.|||.||
RBAM_009350__ 1 TTGGAAACGGTATTAGAACTGCAACAGGTAAAGAAAACGATAAAAGGACG 50
BSNT_01537___ 51 AACGATCATTAATGATCTCAG-TTTTACGATTCGTGAAGGCGAGGTATTC 99
||||||.|||.|||||||.|| ||.|.|| |.||.|..|||||.||.||.
RBAM_009350__ 51 AACGATTATTCATGATCTGAGCTTCTCCG-TCCGGGCGGGCGAAGTGTTT 99
BSNT_01537___ 100 GGTTTTTTAGGACCAAACGGAGCGGGGAAAACGACAACCATCCGGATGAT 149
||.||||||||.||.||.||||||||||||||.||.||.|||.|.|||||
RBAM_009350__ 100 GGATTTTTAGGGCCGAATGGAGCGGGGAAAACCACTACGATCAGAATGAT 149
BSNT_01537___ 150 GGTGGGGTTAATGAAGCTGTCGAAAGGTGATGTCCTCATTTGCGGCCAAT 199
|||.||.||||||||.|||||..|.||.||..||.|.||.|||||..|||
RBAM_009350__ 150 GGTCGGATTAATGAAACTGTCTCAGGGAGACATCGTAATCTGCGGGGAAT 199
BSNT_01537___ 200 CAATTACGAAAGAATATGCCAAGGCGATTAAGCATATTGGAGCGATCGTT 249
|.|||||||||.|.|||||.||.|||.|.|.|||..|.|||||.|||||.
RBAM_009350__ 200 CCATTACGAAAAACTATGCAAAAGCGGTCAGGCACGTCGGAGCCATCGTG 249
BSNT_01537___ 250 GAGAATCCCGAGCTGTATAAATTTTTGAGCGGATATAAAAATCTCCAGCA 299
||.||.||.||||||||.|||||..|||||||.|||||||||.|.|||||
RBAM_009350__ 250 GAAAACCCGGAGCTGTACAAATTCCTGAGCGGTTATAAAAATTTACAGCA 299
BSNT_01537___ 300 ATACGCAAGGATGGTCAAGGGTGTCACGAAGGAAAAAATTGATGAAGTTG 349
.||||||||||||||.||.||.||.|||||.||||||||.|||||.||..
RBAM_009350__ 300 GTACGCAAGGATGGTAAAAGGCGTTACGAAAGAAAAAATAGATGAGGTCA 349
BSNT_01537___ 350 TTGAACTGGTCGGTTTAACA-GACAGAATCCACGACAAGGTGAAAACATA 398
|.||.||.|||||.|| .|| ||||||||.||.|||||.||.|||||.||
RBAM_009350__ 350 TCGAGCTCGTCGGGTT-GCAGGACAGAATACATGACAAAGTAAAAACCTA 398
BSNT_01537___ 399 TTCTCTGGGGATGAGACAGCGTCTTGGCTTGGCACAATGCCTTCTGCACG 448
.|||||.||.||||||||||||||.|||.|.||.|||.||||.|||||..
RBAM_009350__ 399 CTCTCTCGGAATGAGACAGCGTCTCGGCCTCGCCCAAAGCCTGCTGCATA 448
BSNT_01537___ 449 ATCCGAAAGTGCTGATTTTGGATGAACCGACAAACGGCCTTGATCCGGCG 498
||||.||.|||||||||.||||||||||||||||||||||||||||.|||
RBAM_009350__ 449 ATCCTAAGGTGCTGATTCTGGATGAACCGACAAACGGCCTTGATCCCGCG 498
BSNT_01537___ 499 GGGATCAGAGAAATCAGAGATCATTTAAAGAAGCTGACCCGAGAAAGAGG 548
||.|||||.||||||||.||.|||.|.||.||||||||.||.||||.|||
RBAM_009350__ 499 GGCATCAGGGAAATCAGGGACCATCTGAAAAAGCTGACACGTGAAAAAGG 548
BSNT_01537___ 549 AATGGCTGTCATCGTTTCAAGCCACCTGCTGTCAGAAATGGAACTGATGT 598
|||||||||||||||.||||||||.|||||||||||||||||..|.||||
RBAM_009350__ 549 AATGGCTGTCATCGTCTCAAGCCATCTGCTGTCAGAAATGGAGTTAATGT 598
BSNT_01537___ 599 GTGATCGAATTGCGATTCTGCAAAAAGGAAAGCTGATCGATATTCAAAAT 648
|.||.|||||.|..||||||||||||||..||||..|||||||||||||.
RBAM_009350__ 599 GCGACCGAATCGGCATTCTGCAAAAAGGGGAGCTTGTCGATATTCAAAAA 648
BSNT_01537___ 649 GTAAAAGATGAA--AACATTGATGAGAACGATACATATTTCTTCCAGGTT 696
||||..|||||| ||.| ||.||.||.||||||||.||||||||..||
RBAM_009350__ 649 GTAAGGGATGAAGGAAAA--GAGGATAAAGATACATACTTCTTCCATATT 696
BSNT_01537___ 697 GAGCAGCCGAA-TGAAGCCGC---TGCTGTTTTAAATCAGTACGATTTG- 741
||.|| || .||||..|| |||.|||.|.|.|||| ||||
RBAM_009350__ 697 GAACA----AAGAGAAGAGGCTCTTGCCGTTCTGAGTCAG-----TTTGA 737
BSNT_01537___ 742 CTGAGT----AAGACAAATGGTGTAGAAATCAAACTGGCTAAAGACGAAG 787
|||.|| ||||||||.||..|.||.|||||.|||.|.|||.|.||||
RBAM_009350__ 738 CTGTGTGAAGAAGACAAACGGCATTGAGATCAAGCTGTCAAAACAGGAAG 787
BSNT_01537___ 788 TCCCTGCGGTTATTGAATTGCT----GGTGATGCAGCAA--ATCCGTATT 831
|.||||..||.|||..|.|||| .|||| || |||||..|.
RBAM_009350__ 788 TGCCTGATGTGATTTCACTGCTCGTCCGTGA------AAACATCCGCTTA 831
BSNT_01537___ 832 TATGAGGTCAAGGTTATAACAAAATCATTAGAGGACCGTTTCTTAGAAAT 881
|||||.||.||..|.||.||||||||.||.||.|||||||||||.||.||
RBAM_009350__ 832 TATGAAGTGAAAATCATGACAAAATCTTTGGAAGACCGTTTCTTGGAGAT 881
BSNT_01537___ 882 GACAGGTGAAACAAAAGAGGAGGTTCAGCATGCTTAA 918
.||.||.|..||.||||||||||||||..|||.||||
RBAM_009350__ 882 TACCGGCGGGACGAAAGAGGAGGTTCAATATGTTTAA 918
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