Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01540 and RBAM_009380

See Amino acid alignment / Visit BSNT_01540 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence dna-align/BSNT_01540___yhcJ.1.9828.seq
#    -bsequence dna-align/RBAM_009380___yhcJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01540___yhcJ-RBAM_009380___yhcJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01540___yhcJ-RBAM_009380___yhcJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01540___yhcJ
# 2: RBAM_009380___yhcJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 925
# Identity:     552/925 (59.7%)
# Similarity:   552/925 (59.7%)
# Gaps:         188/925 (20.3%)
# Score: 1476.5
# 
#
#=======================================

BSNT_01540___      1 ATGAAAAAGTGGCTTATATGCAGTTTTGTCCTTGTTCTTCTCGTT-----     45
                     .||||...|.||||||||..||||      ||..|||||.||.||     
RBAM_009380__      1 TTGAACCTGCGGCTTATAAACAGT------CTGTTTCTTTTCATTTTGAT     44

BSNT_01540___     46 ----TCATTTACTGCATGT--TCACCGTCTGCAGAACATGAATCG----A     85
                         |||.|||||.|||||  |.|.|  |||    ||..|||.||    |
RBAM_009380__     45 CATGTCACTTACTTCATGTCATTATC--CTG----ACGGGAACCGGACAA     88

BSNT_01540___     86 TAAAAATCGGGATTGCTGAGTCTGA-----CGGGGCAATATGGAACTATA    130
                     |.|..|||||.||...|||.|||||     ||     ||.|||.|.|.|.
RBAM_009380__     89 TTACTATCGGAATCAATGAATCTGATCAATCG-----ATCTGGGAGTTTG    133

BSNT_01540___    131 TTGCTCAAAAGGCTGAAGAGGCAGGGCTGGATATT-CAGC------TGAT    173
                     |.||..||||.||.|..||||.|||       ||| ||||      ||.|
RBAM_009380__    134 TCGCGAAAAAAGCCGGTGAGGAAGG-------ATTGCAGCTCTCTTTGGT    176

BSNT_01540___    174 CCCTTTTTCTGATTATGCGGAGTCTGATATCGCACTTGCTAACAAAGAAA    223
                     ..|.|||||.||||||||.|||.|.|||.|.||.|||||...|...||..
RBAM_009380__    177 AACGTTTTCGGATTATGCCGAGGCCGATTTGGCGCTTGCCGGCGGGGATC    226

BSNT_01540___    224 TTGATGCCAACGCCTTTCAAACCATTTCATATTTTCAGTCGTT----CAC    269
                     |.||.|||||.||.||||||.||.||||.||||||||.||.||    | |
RBAM_009380__    227 TCGACGCCAATGCGTTTCAATCCGTTTCTTATTTTCAATCTTTGCCGC-C    275

BSNT_01540___    270 TCA----AAAATACAAACTTAATTTGGCACCGCTCGGAACGACTTA----    311
                     |||    |||| |.||.|      ||||.||..|.||||||||.||    
RBAM_009380__    276 TCATGTGAAAA-AGAAGC------TGGCTCCTTTAGGAACGACATATGCG    318

BSNT_01540___    312 -CATAACGCCCATGGGCATTTATTCAAAACGATATGACCGAATCCGA--G    358
                      |||  |||   ||||..|.|||||.||.|.|.||.|.||  .|.||  |
RBAM_009380__    319 GCAT--CGC---TGGGGGTGTATTCCAAGCAACATAAACG--GCTGAAGG    361

BSNT_01540___    359 ATATACCGCGA-GGAGCTGTCGTTTCTGTTCCGGATAAAGCGTTCGATTT    407
                     |||||||| || |||||.|||.||.|.||.||.|.|.|||||...|..||
RBAM_009380__    362 ATATACCG-GACGGAGCGGTCATTGCCGTGCCTGGTGAAGCGGCGGCCTT    410

BSNT_01540___    408 TGGCAGGGCGCTTACGGTGCTC---CAGGAAGCGGGTTTGCTAACGCTGA    454
                     .||||||||||||   .|.|||   |||||.||.||..||.|.||..|||
RBAM_009380__    411 CGGCAGGGCGCTT---TTTCTCATGCAGGAGGCCGGACTGATGACATTGA    457

BSNT_01540___    455 AAAACGGATTTAACGGAACAGGTTCAGTTGATATGATTAAAGATAATCCG    504
                     ||||.|||||.|.|||.||.||||||..|||||||||.||.||.||.|||
RBAM_009380__    458 AAAAGGGATTCACCGGTACGGGTTCAACTGATATGATCAAGGACAACCCG    507

BSNT_01540___    505 AGACACCTGAAATTAAAAGCTGTCCGGCAAC-----AGGATG-----CAG    544
                     |..||.||||..||||||     .|||.|||     ||.|.|     |||
RBAM_009380__    508 AAGCATCTGACCTTAAAA-----ACGGAAACAAAAAAGAACGCCTATCAG    552

BSNT_01540___    545 TAAGCGG----TGCCGACG----TGTTTGTCA-TGAAACCATCAGAAGCA    585
                     ...||||    |||.||||    .| ||.||| |.|||.|    ||.||.
RBAM_009380__    553 GCGGCGGAACATGCTGACGCAGCAG-TTCTCAGTCAAAGC----GAGGCG    597

BSNT_01540___    586 AAAAAAGCGGG----CCTGAACCCGAAAAAGCATACGCTAA--AGAGCGG    629
                     ||||.|||.||    |.||    ||.|.|||.|..||||.|  .||.|||
RBAM_009380__    598 AAAAGAGCAGGATTTCATG----CGGAGAAGGACGCGCTGATCCGATCGG    643

BSNT_01540___    630 CGGACCCATGTCTGGGGAAG---AGATGAATTTGATTGTTGTCAGAGCGG    676
                     ||  |..|||   ..|||||   |.||..||.||||.|..|||||.||.|
RBAM_009380__    644 CG--CAAATG---AAGGAAGCGTATATTCATCTGATCGCCGTCAGGGCTG    688

BSNT_01540___    677 AGGATCAAGATCGGGAAGCGCTGCAAA----CCATTCTTGAGCTTTATCA    722
                     |||||.|||||...|||..|.||||||    ||..||||    |.|||||
RBAM_009380__    689 AGGATAAAGATGATGAACGGATGCAAAAACTCCTGTCTT----TGTATCA    734

BSNT_01540___    723 AGCTGATGATACAGCGGCATTTATAGAAAAAGAATACCAGGG-AG-----    766
                     |.|.||||||||.|||||.|||||.|||||||||||..|||| ||     
RBAM_009380__    735 ATCAGATGATACCGCGGCGTTTATTGAAAAAGAATATGAGGGCAGCCTGA    784

BSNT_01540___    767 ---ATCTTGTCC-------CGGCTTTTCTGCCTTTGAAACGTCTTTCAGA    806
                        .|.||.|||       |||| |||||  |..|||||        |||
RBAM_009380__    785 TTCCTGTTTTCCTGAGGGGCGGC-TTTCT--CACTGAAA--------AGA    823

BSNT_01540___    807 TTGGAAGAATGAATTCGAACATTGA    831
                         ||||||||             
RBAM_009380__    824 ----AAGAATGA-------------    831


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