Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01543 and RBAM_009390

See Amino acid alignment / Visit BSNT_01543 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence dna-align/BSNT_01543___yhcK.1.9828.seq
#    -bsequence dna-align/RBAM_009390___yhcK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01543___yhcK-RBAM_009390___yhcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01543___yhcK-RBAM_009390___yhcK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01543___yhcK
# 2: RBAM_009390___yhcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1179
# Identity:     746/1179 (63.3%)
# Similarity:   746/1179 (63.3%)
# Gaps:         198/1179 (16.8%)
# Score: 2178.0
# 
#
#=======================================

BSNT_01543___      1 TTGCTGAAAGAACTGTTTGTAAATTTCACCATTTTAATCACATTTAATTA     50
                     .|||||||.|||||||||.|.|||||.||.||||||||||||||||||||
RBAM_009390__      1 ATGCTGAAGGAACTGTTTCTTAATTTGACGATTTTAATCACATTTAATTA     50

BSNT_01543___     51 TCTCTTCACCCACCTGTTTAAAGAAAGGCTAGTACATAAAAAAGACAGCA    100
                     ||||||||||...||.||||||||...|||...|||||||.|||||.|  
RBAM_009390__     51 TCTCTTCACCGTTCTTTTTAAAGAGTCGCTTTCACATAAAGAAGACCG--     98

BSNT_01543___    101 TATC----TTTTCAAGCTGTTA---AAGGACTGGCCTGCGGTTTGC----    139
                       ||    .||||||    |||   ||||   ||   |||||||||    
RBAM_009390__     99 --TCCGATGTTTCAA----TTACTGAAGG---GG---GCGGTTTGCGGGC    136

BSNT_01543___    140 ---TCGGGGTTATTCTGATGGTTTTTGGATTTACCTA-TCAGCATTCAAT    185
                        |.||||||.|||||||.|.|||.||.|||.|.|| ||.| ||||.||
RBAM_009390__    137 TTTTAGGGGTTTTTCTGATTGCTTTCGGCTTTTCTTACTCCG-ATTCCAT    185

BSNT_01543___    186 TATTGATCTTCGAAATATCCCTATTATGATTGCCGCTCTTTATGGAGGCT    235
                     .||||||||..||||||||||.|||||.||.|||||||||||.|||||||
RBAM_009390__    186 CATTGATCTCAGAAATATCCCCATTATCATCGCCGCTCTTTACGGAGGCT    235

BSNT_01543___    236 GGGTTTCAACGGCAACGGCCCTGGCCATGATCACTGCAGGCCGCTTGCTG    285
                     ||||.||.||.|||.|.|||.|...|||.|||...||||||||..|.|||
RBAM_009390__    236 GGGTGTCTACAGCAGCTGCCTTTTTCATTATCGTGGCAGGCCGTATCCTG    285

BSNT_01543___    286 ----ATTACGATGAACACATCTGCACTATACTCGGTTATTATCATTTGTA    331
                         |||.|.|||      .|.||.|.||         |||    ||.||
RBAM_009390__    286 ATCAATTTCAATG------CCAGCGCCAT---------TTA----TTCTA    316

BSNT_01543___    332 TCGCTGCCATTCCGTCACTCATTG------TTTCT------------AGA    363
                     ||||.||..|  ||.|| |.||||      |||||            |||
RBAM_009390__    317 TCGCCGCAGT--CGGCA-TGATTGCGATACTTTCTGTGGCCGTATTCAGA    363

BSNT_01543___    364 AGAAAAA-----AAGTTCAACTAAAACATGCTTTC--TA------TCTTT    400
                     .||||||     ||  |||   .|||.||||.|||  ||      |||||
RBAM_009390__    364 GGAAAAAAGCCGAA--TCA---CAAAAATGCGTTCGTTATGCTGCTCTTT    408

BSNT_01543___    401 TAATCATCACAAATAGCT-TGATCTCCTT----TTCCTTTTATTTTCTTA    445
                     |        ||||| |.| |.|||.||.|    .|.||.|||    ||||
RBAM_009390__    409 T--------CAAAT-GTTATTATCACCCTGACGCTGCTGTTA----CTTA    445

BSNT_01543___    446 TAGATTTACATTCATAC---GAACTTCATTTGTATTTTTGGATCATATCA    492
                     |...|..||| .|.|.|   |..|.||.||  |||||||||.||||.|| 
RBAM_009390__    446 TGCCTGAACA-GCCTGCCGGGGCCCTCGTT--TATTTTTGGCTCATTTC-    491

BSNT_01543___    493 ATAGC--GGGCGGCATGCTCAGT--TTATATATTATTGATCATGAAACAA    538
                      ||.|  ||||||.|||||  ||  .|.|||||.|||.|.||.|||.|..
RBAM_009390__    492 -TACCTTGGGCGGAATGCT--GTCGCTGTATATCATTAAACACGAAGCCG    538

BSNT_01543___    539 ATGCACATCTTCTTTTTAAACAATATAAGTTTCAGGCGCACTTTGACTTT    588
                     ||||.|..|||.|.||.||.|||||.||||||||.|||.|.|.|||.|||
RBAM_009390__    539 ATGCCCGCCTTTTGTTCAAGCAATACAAGTTTCAAGCGAATTATGATTTT    588

BSNT_01543___    589 TTAACAGGCGTGTATAACCGAAGAAAATTTGAAGAAACCACGAAAGCTCT    638
                     .|.||.||..|.|.|||....||||||||.||.|||..|.||...|.|||
RBAM_009390__    589 CTGACGGGGATTTTTAATAAGAGAAAATTCGAGGAAGTCTCGCGCGTTCT    638

BSNT_01543___    639 GTATCAGCAGGCGGC-CGATACCCCGCATTTTCAATTTGCACTGATTTAT    687
                     |||..|.|.||||.| |.||.||||.| .|.|||..|.||.||.||||||
RBAM_009390__    639 GTACGATCGGGCGTCTCAATCCCCCTC-GTCTCAGCTCGCGCTTATTTAT    687

BSNT_01543___    688 ATGGATATCGATCATTTTAAGACCATCAATGACCAATATGGCCATCATGA    737
                     .|||||||.|||||.||||||...||||||||.|||||.||||||.||||
RBAM_009390__    688 TTGGATATTGATCACTTTAAGCAGATCAATGATCAATACGGCCATTATGA    737

BSNT_01543___    738 AGGAGATCAGGTGCTCAAAGAGCTGGGGTTACGTCTGA-----------A    776
                     |||.||.||.|||||.||.||.||||||...||.||||           |
RBAM_009390__    738 AGGGGACCAAGTGCTGAAGGAACTGGGGGCGCGCCTGAGGCTCTTACTCA    787

BSNT_01543___    777 GCAGAGCATCCGAAATACAGATCCTGCCGCTCGGATCGGCGGTGAAGAAT    826
                     ||||           |.|.|||||..|.||.||.||||||||.|||||||
RBAM_009390__    788 GCAG-----------TTCTGATCCGTCAGCCCGCATCGGCGGGGAAGAAT    826

BSNT_01543___    827 TTGCCGTTCTCCTGCCGAACTGTTCTCTTGAT---AAAG-----CAGCCC    868
                     |||||||.||..||||.||.||  |.|.| ||   ||||     ||.|  
RBAM_009390__    827 TTGCCGTGCTTATGCCCAATTG--CACGT-ATACAAAAGGGCTTCACC--    871

BSNT_01543___    869 GAATCGCTGAACGGATCAGGAGAACTGTAAGTGATGC---ACCGATTGTA    915
                        ||||.|||...||||||...||   .|.|||.||   .||||||.|.
RBAM_009390__    872 ---TCGCAGAAGAAATCAGGCACAC---GATTGACGCGAACCCGATTCTG    915

BSNT_01543___    916 TTAACAAACGGTGA-AGAGCTTTCAGTTACGATATCACTAGGGGCCGCTC    964
                     .|.||.|.|||.|| |.| .||.|.||.||..|.||.||.||...|||.|
RBAM_009390__    916 CTGACGAGCGGAGATACA-ATTCCCGTGACCGTTTCCCTCGGCATCGCGC    964

BSNT_01543___    965 ATTACCCCAATAATACGGAACAGCCAGGATCC-------TTGCCCATTCT   1007
                     ||||.||.|..|||     |||.|  ||||||       ||||||.|..|
RBAM_009390__    965 ATTATCCGACAAAT-----ACATC--GGATCCTCAGACATTGCCCCTGAT   1007

BSNT_01543___   1008 TGCCGATCAAATGCTTTACAAAGCGAAAGAAACGGGACGGAA-CAGAGTG   1056
                     .||.||.|..|||||.||||||||||||..|.|.||.||.|| || ||||
RBAM_009390__   1008 CGCGGACCGGATGCTGTACAAAGCGAAAACATCAGGGCGCAATCA-AGTG   1056

BSNT_01543___   1057 TGTTTTTCA-----GAAAAAAAAGAATGA   1080
                     ||     ||     |||||||||||||||
RBAM_009390__   1057 TG-----CAGCACTGAAAAAAAAGAATGA   1080


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