Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01544 and RBAM_009400
See
Amino acid alignment /
Visit
BSNT_01544 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01544___yhcL.1.9828.seq
# -bsequence dna-align/RBAM_009400___yhcL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01544___yhcL-RBAM_009400___yhcL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01544___yhcL-RBAM_009400___yhcL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01544___yhcL
# 2: RBAM_009400___yhcL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1407
# Identity: 1104/1407 (78.5%)
# Similarity: 1104/1407 (78.5%)
# Gaps: 30/1407 ( 2.1%)
# Score: 4318.0
#
#
#=======================================
BSNT_01544___ 1 TTGGAGACTTTACTGGTTGTATTACATGTATTTATTTTATTTTTACTTAT 50
|||||||.||||.|.||..|.||||||||.||||||||.|||||..||||
RBAM_009400__ 1 TTGGAGAATTTATTTGTAATCTTACATGTTTTTATTTTGTTTTTGTTTAT 50
BSNT_01544___ 51 CTTAGGGCTCTTTGTTATGCAGAAAAAACATGTTTCCTTCTCTAAACGTG 100
...|||.||.|||||.|||||.||||||||.||||||||.||||||||||
RBAM_009400__ 51 AGCAGGTCTGTTTGTGATGCAAAAAAAACACGTTTCCTTTTCTAAACGTG 100
BSNT_01544___ 101 TATTTACTGCGCTGGGGCTGGGGATTGTATTCGGATTTGCGCTTCAGCTG 150
|.|||||.|||||.||..|.||.|||||||||||.||||||||.||..||
RBAM_009400__ 101 TCTTTACCGCGCTCGGATTAGGCATTGTATTCGGTTTTGCGCTGCAATTG 150
BSNT_01544___ 151 ATTTACGGCCCGACTTCAAATATAGTCATTCAAACAGCCGACTGGTTTAA 200
||||||||.|||.|.|||.||.|.||.|...||||.|||||.||||||||
RBAM_009400__ 151 ATTTACGGGCCGGCCTCACATGTCGTGACAAAAACGGCCGATTGGTTTAA 200
BSNT_01544___ 201 TATTGCCGGGGGCGGATATGTCAAATTGCTTCAGATGGTTGTCATGCCGC 250
|||||||||.|||||.|||||||||||||||||||||.|.||||||||||
RBAM_009400__ 201 TATTGCCGGCGGCGGTTATGTCAAATTGCTTCAGATGATCGTCATGCCGC 250
BSNT_01544___ 251 TCGTCTTTATTTCGATTCTCGGCGCCTTTACAAAGCTGAAGCTGA--CAA 298
|.|||||||||||.|||||||||||.|||||.|||||.||.|||| ||.
RBAM_009400__ 251 TAGTCTTTATTTCTATTCTCGGCGCATTTACGAAGCTTAAACTGACCCAT 300
BSNT_01544___ 299 AAAATCTTGGGAAAATCAGCGGTTTGATTATCGGGATTTTAGTAGCAACA 348
||.||| |||||||||||||||.||||.|||||.|||||..|.||.||.
RBAM_009400__ 301 AACATC--GGGAAAATCAGCGGTCTGATCATCGGAATTTTGATCGCTACG 348
BSNT_01544___ 349 ACAGCAGTTGCTGCAGCTGTCGGTATCGCGTCCGCGCTTTCATTTGATCT 398
||||||.||||.||.||.|||||.||.|..||.||||||||.||||||||
RBAM_009400__ 349 ACAGCAATTGCCGCGGCAGTCGGAATTGTTTCGGCGCTTTCCTTTGATCT 398
BSNT_01544___ 399 GCAGGCGATTCAGGTTGACCAAGGAAGTACAGAGCTTTCACGGGGACAGG 448
|.|.||..||||..|.|||||.||.||.||.|||.|.|||.||||.||||
RBAM_009400__ 399 GAAAGCCGTTCATATCGACCAGGGGAGCACTGAGTTATCAAGGGGTCAGG 448
BSNT_01544___ 449 AGCTTCAGCAGAAATCAGAGGATATGACAGCGAAAACGCTGCCGCAGCAG 498
||||.|||||.|||||.|||||||||||.||.|||||||||||.|||||.
RBAM_009400__ 449 AGCTGCAGCAAAAATCTGAGGATATGACGGCCAAAACGCTGCCTCAGCAA 498
BSNT_01544___ 499 ATTGTTGAACTGCTGCCTGGAAACCCGTTTTTAGATTTCACGGGAGCTAG 548
||.|||||.||.|||||.||.||.||||||.|.||||||||||||||.||
RBAM_009400__ 499 ATCGTTGAGCTTCTGCCGGGGAATCCGTTTCTTGATTTCACGGGAGCCAG 548
BSNT_01544___ 549 ACCGACTTCAACAATCGCTGTCGTTATTTTTGCCGCTTTCCTTGGAGTGG 598
|||||||||.||.||||..|||||||||||.|||||||||||.||..|.|
RBAM_009400__ 549 ACCGACTTCCACCATCGGAGTCGTTATTTTCGCCGCTTTCCTCGGCATCG 598
BSNT_01544___ 599 CATTCCTCGGAGTAAAACACAAACAGCCGGAACAGGCAGAAACATTTA-- 646
|.||.||.||.||.||||..||.||||||||.||.||||..|||||.|
RBAM_009400__ 599 CTTTTCTGGGCGTGAAACGGAAGCAGCCGGAGCACGCAGCGACATTCAGC 648
BSNT_01544___ 647 --AAAAACTGGTTGATGCCGTTTATGCCATTGTCATGCGTGTTGTCACAC 694
|| |.||.|||||.|||||.||.|||.|.|||||.||.||.|||.
RBAM_009400__ 649 GGAA----TTGTCGATGCGGTTTACGCGATTATTATGCGCGTCGTGACAT 694
BSNT_01544___ 695 TCATTTTGAGACTGACGCCTTATGGGGTGCTGGCCATCATGACAAAAACA 744
|.|||||.||||||||||||||.|||||..||||.||.|||||.|||||.
RBAM_009400__ 695 TAATTTTAAGACTGACGCCTTACGGGGTATTGGCGATTATGACCAAAACG 744
BSNT_01544___ 745 ATTGCCACGAGTGATCTTGACAGCATTCTAAAACTGGGCATGTTCGTGAT 794
||.||.||.||.||..|.|||||||||...||||||||.|||||.|||||
RBAM_009400__ 745 ATCGCGACAAGCGACATCGACAGCATTGCGAAACTGGGGATGTTTGTGAT 794
BSNT_01544___ 795 TGCTTCATATGCCGCGTTAATCACTATGTTTATCATTCATTTGCTGCTGC 844
.||||||||.||||||.|.|||.|.||||||||||||||.|||||||||.
RBAM_009400__ 795 CGCTTCATACGCCGCGCTTATCGCCATGTTTATCATTCACTTGCTGCTGA 844
BSNT_01544___ 845 TGACGTTCAGCGGCTTGAATCCGGTGATTTATTTGAAAAAAGCGGTGCCT 894
|.|||||||||||.||.||||||.|.|..||..||||||||||..|.||.
RBAM_009400__ 845 TCACGTTCAGCGGTTTAAATCCGATCACATACGTGAAAAAAGCATTTCCG 894
BSNT_01544___ 895 GTACTTGTATTTGCATTTACGTCAAGGTCTAGCGCAGGTGCTTTACCGCT 944
||..|.||.|||||.||||||||..|.||.||||||||.|||||.|||||
RBAM_009400__ 895 GTTATGGTGTTTGCGTTTACGTCCCGTTCAAGCGCAGGGGCTTTGCCGCT 944
BSNT_01544___ 945 GAATATTAAAACACAGAGAAGCATGGGTGTACCGGAGGGAATCGCAAACT 994
.||||||||||||||.|.|||||||||.||||||||.||.||.||.||||
RBAM_009400__ 945 CAATATTAAAACACAAAAAAGCATGGGCGTACCGGAAGGCATTGCGAACT 994
BSNT_01544___ 995 TTGCCGGTTCGTTCGGTCTT-TCGATCGGCCAAAATGGATGTGCCGGCAT 1043
|.||||||||.||||| ||| ||.|||||.|||||.||.|||||||||||
RBAM_009400__ 995 TCGCCGGTTCATTCGG-CTTATCAATCGGTCAAAACGGCTGTGCCGGCAT 1043
BSNT_01544___ 1044 TTATCCTGCGATGCTGGCGATGATGATTGCTCCGACTGTCGGCCAAAATC 1093
|||.||.||||||||.||||||||||||||.|||||.||.||.|||||.|
RBAM_009400__ 1044 TTACCCGGCGATGCTCGCGATGATGATTGCGCCGACAGTAGGACAAAACC 1093
BSNT_01544___ 1094 CATTTGACCCGGTGTTTATTATCACTGTTATCGCAGTCGTTGCCATCAGC 1143
|.|||||.||||..|||||.|||.||||.|||||..||||.||.|||||.
RBAM_009400__ 1094 CGTTTGAACCGGGATTTATCATCTCTGTCATCGCCATCGTGGCAATCAGT 1143
BSNT_01544___ 1144 TCCTTCGGTGTTGCCGGAGTCGGCGGCGGAGCCACATTCGCGGCGCTTCT 1193
||.||||||||.||.||.||.||.|||||.||.|||||.|||||.|||||
RBAM_009400__ 1144 TCATTCGGTGTAGCAGGCGTGGGAGGCGGCGCGACATTTGCGGCTCTTCT 1193
BSNT_01544___ 1194 TGTTTTATCATCATTAAACATGCCTGTCGCGCTTGCTGGTTTGTTAATCT 1243
.||..||||..|.||.|||||||||||.||||||||.||..||.|.||||
RBAM_009400__ 1194 CGTCCTATCCGCTTTGAACATGCCTGTGGCGCTTGCCGGGCTGCTCATCT 1243
BSNT_01544___ 1244 CAATTGAACCGTTAATCGACATGGGGCGTACTGCTTTGAATGTCAGCGGA 1293
|||||||.||||||||.|||||||||||.||.||.||.|||||||||||.
RBAM_009400__ 1244 CAATTGAGCCGTTAATTGACATGGGGCGCACCGCCTTAAATGTCAGCGGC 1293
BSNT_01544___ 1294 AGCATGACATCCGGTCTTATTACAAGTAAGGTCACAAAGGAAATTGATCA 1343
||.|||||..|.||.||..|.||||||||..|.||.|||||||..|||..
RBAM_009400__ 1294 AGTATGACCGCAGGGCTGTTAACAAGTAAAATGACGAAGGAAACCGATAC 1343
BSNT_01544___ 1344 AGGGG----CATTTCATGA----TCAATCCAGAGTGATTGAAGCTGAAGA 1385
.|.|| || |||| |||||| ||.||||||||||||||
RBAM_009400__ 1344 CGCGGTGTACA----ATGATTCCTCAATC----GTCATTGAAGCTGAAGA 1385
BSNT_01544___ 1386 AGCGTAA 1392
|||.|||
RBAM_009400__ 1386 AGCTTAA 1392
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.