Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01581 and RBAM_009410
See
Amino acid alignment /
Visit
BSNT_01581 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_01581___yhcM.1.9828.seq
# -bsequence dna-align/RBAM_009410___yhcM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01581___yhcM-RBAM_009410___yhcM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01581___yhcM-RBAM_009410___yhcM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01581___yhcM
# 2: RBAM_009410___yhcM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 624
# Identity: 313/624 (50.2%)
# Similarity: 313/624 (50.2%)
# Gaps: 222/624 (35.6%)
# Score: 761.5
#
#
#=======================================
BSNT_01581___ 1 ATGTTGTTCAACCAGCGAAGAGGAATCAGCCCCACAGCATTGATCATAGG 50
|||||||...|...|||.||.||||||||.|||||..||.|.||.||
RBAM_009410__ 1 ---TTGTTCAGAAAAAAAAGCGGCATCAGCCCGACAGCGCTGCTGATCGG 47
BSNT_01581___ 51 ATCAACTATGCTTATTGCTGCATTATCACCTCAGATCCGCCACAGAATCA 100
||||.|.||.||.|||||.||.||||||||..|.|||||||..|.||||.
RBAM_009410__ 48 ATCATCGATTCTGATTGCAGCTTTATCACCCGAAATCCGCCGGAAAATCT 97
BSNT_01581___ 101 GCG----GGTTTATCACAGGACA-AATGAACAGACGAAATTCAGAAA-AT 144
.|| ||||| |||| || |||| ||| ||.||| ||
RBAM_009410__ 98 CCGGAATGGTTT----CAGG-CAGAATG--CAG--------CATAAAGAT 132
BSNT_01581___ 145 --AACACGTTTGATG----CTTCTAA--TGTAGGAAACATAGTCAAACAA 186
.||||..|..||| ||.||.| || |.|| ||||.
RBAM_009410__ 133 GGCACACACTCCATGCAGCCTGCTGACCTG----------ATTC-AACAG 171
BSNT_01581___ 187 GCATTTAGCGG-------------CGGCAG--CGGTGATAA--CCAGG-- 217
||.||.||||| |.|||| ||..||.|| ||.||
RBAM_009410__ 172 GCGTTCAGCGGGGAATCCGGCGGACAGCAGCACGCAGACAAAGCCCGGCA 221
BSNT_01581___ 218 -------ACCG-----TTCGCAG-----------AATCAAA---GC---C 238
|||| || |||| .|||||| || |
RBAM_009410__ 222 TTCACAAACCGGCTCCTT-GCAGCCTGCCGAGCTGATCAAACAGGCTTTC 270
BSNT_01581___ 239 AGCGGCAAAAT--GGCCGTCAGCACCAGCACGCAGGACA----------- 275
.||||| .||| |||.|.||| ||||||.|| ||||
RBAM_009410__ 271 GGCGGC-GAATCCGGCGGACAG---CAGCACACA-GACAAAGCCCGGCAT 315
BSNT_01581___ 276 -----------------GCAG--------------CAACCA--------- 285
|||| |||.||
RBAM_009410__ 316 TCACAAACCGGCTCCTTGCAGCCTGCCGAGCTGATCAAACAGGCTTTCGG 365
BSNT_01581___ 286 -------------------CAGCATCAGCATA------------------ 298
||||||.||||.|
RBAM_009410__ 366 CGGCGAATCCGGCGGACAGCAGCATGAGCAGACTTCCCGCAATCACGCCG 415
BSNT_01581___ 299 -CACAGTCTCAAAC-------TAGGCAAACTGAGACTGCCGC-GAAAAAA 339
|.|| ||.||.|| .|||||.||.| |.||||| |.|||.|
RBAM_009410__ 416 GCTCA-TCCCATACGGACGGACAGGCAGACCG---CAGCCGCAGTAAAGA 461
BSNT_01581___ 340 AGAC--------AGCCGCATTATGCTGAACCCATTCATTTTGAACAAAGC 381
| || ||||.||.|||.|.||.||.|||||.||.|||.|||||
RBAM_009410__ 462 A-ACTTCGCCGAAGCCTCACTATACCGAGCCGATTCACTTCGAAGAAAGC 510
BSNT_01581___ 382 GCAATGAATGTCATGGACGACAACACGATGATGGAAATGCTGGAGGACTT 431
||..|.|||||..|..|.||||.|||..|||||.|.||||||||.||..|
RBAM_009410__ 511 GCGGTAAATGTTTTAAATGACAGCACCGTGATGAATATGCTGGAAGAAAT 560
BSNT_01581___ 432 AGAACCCGGCCGTTAA-------- 447
.|||||||| ||
RBAM_009410__ 561 TGAACCCGG-----AAATCATTAG 579
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.