Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01601 and RBAM_009560

See Amino acid alignment / Visit BSNT_01601 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_01601___glpD.1.9828.seq
#    -bsequence dna-align/RBAM_009560___glpD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01601___glpD-RBAM_009560___glpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01601___glpD-RBAM_009560___glpD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01601___glpD
# 2: RBAM_009560___glpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1674
# Identity:    1306/1674 (78.0%)
# Similarity:  1306/1674 (78.0%)
# Gaps:          12/1674 ( 0.7%)
# Score: 5081.0
# 
#
#=======================================

BSNT_01601___      1 ATGATGAAACATCAATTTTCAAGTCTTGAAAGAGATCGCATGCTGACAGA     50
                     ||||||||.||.||||||||||||.|.|||.|.||||..||||||..|||
RBAM_009560__      1 ATGATGAATCACCAATTTTCAAGTTTGGAACGGGATCATATGCTGGAAGA     50

BSNT_01601___     51 CATGACGAAAAAAACATATGACCTATTTATTATCGGAGGAGGAATTACAG    100
                     ||||||.|||||||||||.||.||.||||||||.||.|||||.|||||.|
RBAM_009560__     51 CATGACTAAAAAAACATACGATCTGTTTATTATAGGGGGAGGTATTACGG    100

BSNT_01601___    101 GAGCCGGAACAGCTCTTGACGCGGCATCAAGGGGAATGAAGGTCGCACTA    150
                     |.|||||.||.||.||||||||.||.||||||||||||||.|||||..|.
RBAM_009560__    101 GTGCCGGCACGGCGCTTGACGCTGCTTCAAGGGGAATGAAAGTCGCTTTG    150

BSNT_01601___    151 AGCGAAATGCAGGACTTTGCGGCGGGAACATCAAGCCGATCAACGAAGCT    200
                     ||||||||||||||.||.|||||.||.|||||||||.||||.||.|||||
RBAM_009560__    151 AGCGAAATGCAGGATTTCGCGGCCGGCACATCAAGCAGATCCACAAAGCT    200

BSNT_01601___    201 GGTACATGGCGGCTTGCGCTATTTAAAACAATTTGAAGTGAAAATGGTCG    250
                     .||.||.|||||.|||||.|||.|.||.|||||||||||.||||||||.|
RBAM_009560__    201 TGTCCACGGCGGTTTGCGTTATCTGAAGCAATTTGAAGTCAAAATGGTTG    250

BSNT_01601___    251 CTGAGGTAGGAAAAGAGCGGGCGATTGTGTATGAAAACGGCCCGCATGTC    300
                     |.||.||.||.||.||.||.||.||.|||||.||||||||||||||.|||
RBAM_009560__    251 CAGAAGTCGGTAAGGAACGTGCCATCGTGTACGAAAACGGCCCGCACGTC    300

BSNT_01601___    301 ACTACACCGGAATGGATGCTGCTTCCATTTCATAAAGGCGGCACATTTGG    350
                     ||.||.|||||||||||||||||.||.|||||||||||||||||.||.||
RBAM_009560__    301 ACGACGCCGGAATGGATGCTGCTGCCGTTTCATAAAGGCGGCACGTTCGG    350

BSNT_01601___    351 TTCATTTACAACATCTATCGGGTTAAGGGTTTATGACTTCCTTGCAGGTG    400
                     ||||||..|.||.||.|||||..|..|.||.|||||||...|.||.||.|
RBAM_009560__    351 TTCATTCTCTACTTCCATCGGCCTGCGTGTGTATGACTATTTAGCGGGAG    400

BSNT_01601___    401 TGAAAAAGTCAGAACGAAGAAGCATGCTTTCAGCAAAAGAAACGCTGCAA    450
                     |.|||||.|||||.||.|||||||||||.||.||.|||||||||||||||
RBAM_009560__    401 TAAAAAAATCAGAGCGCAGAAGCATGCTGTCTGCTAAAGAAACGCTGCAA    450

BSNT_01601___    451 AAAGAGCCTTTGGTAAAAAAAGACGGCTTAGAAGGCGGCGGGTACTATGT    500
                     ||||||||..|.||.|||||||||||||||.|||||||.||.||.|||||
RBAM_009560__    451 AAAGAGCCGCTCGTCAAAAAAGACGGCTTAAAAGGCGGAGGCTATTATGT    500

BSNT_01601___    501 GGAATACCGCACTGACGATGCGAGACTGACCATCGAAGTCATGAAGGAAG    550
                     .||||||||.||.|||||||||||||||||.||.|||||||||||.||||
RBAM_009560__    501 AGAATACCGGACGGACGATGCGAGACTGACGATTGAAGTCATGAAAGAAG    550

BSNT_01601___    551 CGGTGAAATTCGGGGCAGAGCCTGTGAATTACTCCAAAGTGAAGGAGCTT    600
                     |.||.||||||||.||.||||||||.||.||.||.||||||||.||.||.
RBAM_009560__    551 CCGTTAAATTCGGTGCGGAGCCTGTCAACTATTCTAAAGTGAAAGAACTG    600

BSNT_01601___    601 CTTTACGAAAAAGGCAAAGCCGTCGGCGTATTAATTGAAGATGTGCTGAC    650
                     |||||.||||||||.||||..||||||||.||||||||||||.|||||.|
RBAM_009560__    601 CTTTATGAAAAAGGAAAAGTTGTCGGCGTTTTAATTGAAGATCTGCTGTC    650

BSNT_01601___    651 AAAGAAAGAATATAAAGTGTATGCGAAAAAAATTGTCAATGCTACAGGCC    700
                     |...||.|||||.|||||.||.||.||||||||.||||||||.|||||.|
RBAM_009560__    651 AGGCAAGGAATACAAAGTTTACGCCAAAAAAATCGTCAATGCGACAGGTC    700

BSNT_01601___    701 CTTGGGTCGATCAGCTCAGAGAAAAAGACCATTCGAAAAACGGAAAGCAT    750
                     |.||||||||..||||.||||||||||||||....||||.||||||.|||
RBAM_009560__    701 CGTGGGTCGACGAGCTGAGAGAAAAAGACCACAGCAAAAGCGGAAAACAT    750

BSNT_01601___    751 TTGCAGCATACAAAAGGCATTCACCTTGTATTTGACCAGTCTGTCTTTCC    800
                     .|.|||||.||||||||..|.||.||.|||||.|||||.||.||.||.||
RBAM_009560__    751 CTTCAGCACACAAAAGGGGTCCATCTCGTATTCGACCAATCCGTATTCCC    800

BSNT_01601___    801 GCTGAAACAGGCTGTATATTTCGATACACCTGATGGCCGGATGGTATTTG    850
                     |||.||||||||.||.||.||.|||||.||.||.|||||||||||.||.|
RBAM_009560__    801 GCTTAAACAGGCGGTGTACTTTGATACGCCGGACGGCCGGATGGTGTTCG    850

BSNT_01601___    851 CGATTCCTCGTGAAGGCAAAACATACGTGGGAACAACAGACACTGTTTAC    900
                     |.|||||.||||||||.||||||||||||||.||.||.||.||.||||||
RBAM_009560__    851 CCATTCCGCGTGAAGGAAAAACATACGTGGGTACGACCGATACGGTTTAC    900

BSNT_01601___    901 AAAGAGGCGCTGGAGCATCCGCGGATGACAACGGAGGATCGTGATTATGT    950
                     |||.|....||.|||||.|||||.|||||...|.|||||||.||||||||
RBAM_009560__    901 AAACAAAAACTTGAGCACCCGCGCATGACGGTGCAGGATCGCGATTATGT    950

BSNT_01601___    951 CATCAATTCAATCAATTATATGTTCCCGGAACTGAATATCACTGCGAATG   1000
                     |.|||..||.||||||||||||||||||||||||||.||.||.|||.|.|
RBAM_009560__    951 CGTCAGCTCCATCAATTATATGTTCCCGGAACTGAACATTACGGCGGACG   1000

BSNT_01601___   1001 ACATCGAATCCAGCTGGGCAGGGCTGCGTCCGCTGATTCATGAAGAAGGC   1050
                     |.||.|||||.||||||||.||.||..|.|||||.|||||.||||||||.
RBAM_009560__   1001 ATATTGAATCAAGCTGGGCCGGCCTCAGACCGCTTATTCACGAAGAAGGG   1050

BSNT_01601___   1051 AAAGATCCTTCTGAAATTTCACGGAAAGACGAGATTTGGACATCTGACTC   1100
                     |||||.||.|||||.||.||.||.|||||.||.||.|||||||||.|.||
RBAM_009560__   1051 AAAGACCCGTCTGAGATCTCCCGTAAAGATGAAATCTGGACATCTCAATC   1100

BSNT_01601___   1101 AGGCTTGATCACCATTGCCGGCGGAAAACTGACTGGATACAGAAAAATGG   1150
                     ||||.||||.||.||.|||||.|||||||||||.||.|||.|.|||||||
RBAM_009560__   1101 AGGCCTGATTACGATCGCCGGAGGAAAACTGACGGGCTACCGTAAAATGG   1150

BSNT_01601___   1151 CGGAGCACATCGTTGATCTTGTACGTGACCGCTTAAAAGAAGAAGGCGCA   1200
                     |.||||||||.||.||||||||.||.||||||||.||||||||.||||..
RBAM_009560__   1151 CTGAGCACATTGTCGATCTTGTCCGCGACCGCTTGAAAGAAGAGGGCGGC   1200

BSNT_01601___   1201 AAGGATTTTGGCCCGTGTAAAACGAAAAACATGCCAATCTCAGGCGGGCA   1250
                     .||||.||.|||...||.||.|||||.|..|||||.||.||.|||||.||
RBAM_009560__   1201 CAGGACTTCGGCGGCTGCAAGACGAAGACGATGCCGATTTCCGGCGGACA   1250

BSNT_01601___   1251 CGTCGGAGGTTCGAAAAATCTCATGTCCTTCGTTACCGCGAAAACAAAAG   1300
                     .|||||.||.||.|||||..||..|||.||.||....||.||.|||||||
RBAM_009560__   1251 TGTCGGCGGCTCTAAAAACTTCGAGTCATTTGTGGAAGCAAAGACAAAAG   1300

BSNT_01601___   1301 AAGG------AATTGCAGCCGGTTTATCAGAAAAAGACGCAAAACAGCTG   1344
                     |.||      |||      ||||||||||.|..||..|||.||.|||.|.
RBAM_009560__   1301 ACGGCTTGAAAAT------CGGTTTATCACAGGAAACCGCTAAGCAGTTA   1344

BSNT_01601___   1345 GCGATCAGATACGGCTCTAACGTAGATCGCGTCTTTGACCGGATAGAAGC   1394
                     ||.||||||||||||||||||||.||....||.||...||||||.||||.
RBAM_009560__   1345 GCCATCAGATACGGCTCTAACGTTGAAAATGTATTCAGCCGGATTGAAGG   1394

BSNT_01601___   1395 GCTGAAAGATGAGGCCGCGAAACGCAACATTCCGGTTCATATTCTTGCTG   1444
                     .||||||||.||.||.|..||||||.|.|||||||||||.|||.|.||.|
RBAM_009560__   1395 TCTGAAAGACGAAGCGGAAAAACGCCAGATTCCGGTTCACATTTTGGCGG   1444

BSNT_01601___   1445 AGGCAGAATACAGTATAGAAGAAGAGATGACTGCAACCCCTGCTGACTTC   1494
                     |.||.|..|||||.||.||||||||.|||.||||.||.|||||.||.|||
RBAM_009560__   1445 AAGCGGCTTACAGCATCGAAGAAGAAATGGCTGCGACACCTGCCGATTTC   1494

BSNT_01601___   1495 TTTGTCCGCAGAACGGGACGTTTATTTTTTGATATCAATTGGGTAAGAAC   1544
                     ||.|||||||||||||||.|..|.||.||.||.|||||.|||||...|||
RBAM_009560__   1495 TTCGTCCGCAGAACGGGAAGACTGTTCTTCGACATCAAATGGGTGCAAAC   1544

BSNT_01601___   1545 ATATAAAGATGCCGTTATTGATTTTATGAACGAGCGATTCCAATGGGATG   1594
                     .||||||...|||||.|||||||..||||.|||.||||||||||||.|||
RBAM_009560__   1545 GTATAAAACAGCCGTGATTGATTACATGAGCGACCGATTCCAATGGAATG   1594

BSNT_01601___   1595 AGCAGGCAAAAAACAAACATACAGAAAACCTCAACAAGCTTTTACACGAT   1644
                     |..|..|.|||.|.|||||.||.||.....|.||.|.|||..|.|||||.
RBAM_009560__   1595 ACGAAACGAAAGAAAAACACACTGAGTGGTTAAATACGCTGCTGCACGAC   1644

BSNT_01601___   1645 GCGGTCGTACCGCTTGAGCAATAA   1668
                     |||||.||.|||||.||.||||||
RBAM_009560__   1645 GCGGTTGTTCCGCTCGAACAATAA   1668


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