Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01607 and RBAM_009590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01607___yhcZ.1.9828.seq
# -bsequence dna-align/RBAM_009590___yhcZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01607___yhcZ-RBAM_009590___yhcZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01607___yhcZ-RBAM_009590___yhcZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01607___yhcZ
# 2: RBAM_009590___yhcZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 662
# Identity: 469/662 (70.8%)
# Similarity: 469/662 (70.8%)
# Gaps: 31/662 ( 4.7%)
# Score: 1577.0
#
#
#=======================================
BSNT_01607___ 1 ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCG 50
|||||||||||.|||||||||||||||||.||||||.|.||.||.|||||
RBAM_009590__ 1 ATGAAAATTGTGATTGCTGATGATCATCACGTTGTCCGCAAAGGACTGCG 50
BSNT_01607___ 51 TTTTTTCTTTGCCACCCAGGATGATATTGAAGTCGTCGGAGAAGCTGCAA 100
.|.||||||.|||||.|||||.||.||||||||.|||||.||.||..|.|
RBAM_009590__ 51 CTATTTCTTCGCCACTCAGGAAGACATTGAAGTTGTCGGTGAGGCGTCCA 100
BSNT_01607___ 101 CCGGAATAGAAGCTCTCCGTGTCATC-----GAAGAGACAAAGCCGGATC 145
||||....|||||.|| |||.| |||.||||..|||||||..
RBAM_009590__ 101 CCGGTGCTGAAGCGCT-----TCAGCAAGCTGAAAAGACGGAGCCGGACA 145
BSNT_01607___ 146 TTGTGCTAATGGATCTGTCTATGCCCGAGATGGACGGCATTCAAGC--CA 193
|..|.||.||||||.|.||.|||||.||.|||||||||||..|||| ||
RBAM_009590__ 146 TCATTCTGATGGATTTATCAATGCCTGATATGGACGGCATAGAAGCGGCA 195
BSNT_01607___ 194 TTAAAAAAGC-----AATACAGCAATTTCCGGATACGAATATCATTGTGC 238
||||..|| || |.|||.|||||.|..|.||||.|.||..
RBAM_009590__ 196 --AAAATTGCGGCTGAA-----CGATTCCCGGACATCAGTATCGTCGTTT 238
BSNT_01607___ 239 TGACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGC 288
||||||||||.||||||||||||||.|||||.|||||.|||.|.||.|||
RBAM_009590__ 239 TGACGAGCTATTCTGATCAGGAGCATGTCATTCCCGCCCTTAAAGCCGGC 288
BSNT_01607___ 289 GCGAAGGCGTATCAATTAAAGGATACGGAGCCCGAGGAATTGGTGAAAAC 338
||.||.||||||||..|.||.||..|..|||||||.||.||.||||||||
RBAM_009590__ 289 GCAAAAGCGTATCAGCTGAAAGACGCCCAGCCCGATGATTTAGTGAAAAC 338
BSNT_01607___ 339 ACTAAGACAAGTGCATGGTGG-CGAATACAAGCTTTCTACAGCTATTATG 387
.||..|..|||||.||...|| || .|||..|||.||..|.|.||||.||
RBAM_009590__ 339 GCTCCGGGAAGTGTATTCCGGACG-TTACCGGCTGTCGGCGGATATTGTG 387
BSNT_01607___ 388 CCCCATGTGCTAACACATATGAAAAATCAGCACGACCCGGAAAAAGAAAA 437
||.||.|||||.||.|||||| ..||||.|.||.|.|||.||.||.||
RBAM_009590__ 388 CCTCACGTGCTGACCCATATG---GTTCAGGATGATCAGGATAAGGAGAA 434
BSNT_01607___ 438 ATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAAATAGCGA 487
|||..||||..|.||.....|.||||||||.|||||....||||||||.|
RBAM_009590__ 435 ATATGATCAGCTGACCCCTCGTGAAAAAGATGTTCTTCAAGAAATAGCCA 484
BSNT_01607___ 488 ACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAA 537
|.||.|||||||||||.|||||.||.||.||..|||||||||||||||||
RBAM_009590__ 485 AAGGAAAAAGCAATAAGGAAATTGCGGCGGCACTGTTTATTTCAGAAAAA 534
BSNT_01607___ 538 ACAGTAAAAACCCATGTATCGAATCTTTTAGCAAAACTTGAA-GTGGCCG 586
|||||.||.|||||.||.||.||.||..|..||||.| |||| .|..|||
RBAM_009590__ 535 ACAGTGAAGACCCACGTGTCCAACCTGCTGTCAAAGC-TGAATCTTTCCG 583
BSNT_01607___ 587 ATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAG 636
||||.|||||.||.||..|.|..||.||.|||||||||.|...||||.||
RBAM_009590__ 584 ATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAG 633
BSNT_01607___ 637 ATCTCAAAATGA 648
.....|||||||
RBAM_009590__ 634 GCGGTAAAATGA 645
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