Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01609 and RBAM_009600

See Amino acid alignment / Visit BSNT_01609 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_01609___yhdA.1.9828.seq
#    -bsequence dna-align/RBAM_009600___yhdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01609___yhdA-RBAM_009600___yhdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01609___yhdA-RBAM_009600___yhdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01609___yhdA
# 2: RBAM_009600___yhdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity:     382/540 (70.7%)
# Similarity:   382/540 (70.7%)
# Gaps:          27/540 ( 5.0%)
# Score: 1260.0
# 
#
#=======================================

BSNT_01609___      1 ---ATGAACATGTTAGTCATAAATGGCACGCCTAGAAAACATGGCAGAAC     47
                        ||||.|||.|||||.||.|..||.||.||.||||||.|.||..|.||
RBAM_009600__      1 ATGATGAGCATATTAGTGATCAGCGGAACACCGAGAAAAAACGGGCGGAC     50

BSNT_01609___     48 AAGAATTGCAGCATCCTATATTGCAGCTCTGTATCACACGGATTTGATTG     97
                     .||||||||.||.||.|||||...||.||.||.|||.||.|||||.||||
RBAM_009600__     51 TAGAATTGCCGCTTCTTATATAAGAGATCGGTTTCATACCGATTTTATTG    100

BSNT_01609___     98 ATCTAAGCGAGTTTGTATTGCCCGTTTTTAACGGTGAAGCGGATCA-ATC    146
                     ||.|.|||||...||.|.||||..|||.|||||||||||..||.|| |.|
RBAM_009600__    101 ATTTGAGCGAAAGTGAACTGCCGCTTTATAACGGTGAAGAAGAACAGAAC    150

BSNT_01609___    147 TGAACTGTTGAAAGTACAGGAGCTTAAGAAACGCGTTACG----AAAG-C    191
                      ||.|||...|.|||.||.||| |||||    |||..|.|    |||| |
RBAM_009600__    151 -GAGCTGCCTACAGTGCAAGAG-TTAAG----GCGGCAGGTGAAAAAGTC    194

BSNT_01609___    192 GGATGCGATTGTATTATTATCGCCTGAATATCACAGCGGCATGAGCGGCG    241
                     ||..||..|.||.||||||||.||.||.||||||||||||||||||||||
RBAM_009600__    195 GGCGGCCGTCGTCTTATTATCTCCCGAGTATCACAGCGGCATGAGCGGCG    244

BSNT_01609___    242 CTTTAAAAAATGCTTTGGATTTTCTAAGCAGCGAACAATTCAAATATAAG    291
                     ||||||||||.||..|.||||||.||||||||||.||.|....|||.||.
RBAM_009600__    245 CTTTAAAAAACGCCATCGATTTTTTAAGCAGCGATCACTGGGCATACAAA    294

BSNT_01609___    292 CCCGTTGC-ATTATTGGCAGTAGCGGGAGGCGGAAAAGGCGGCATCAATG    340
                     ||.||.|| ||.||| ||.|..|||||.||.||||||||.|||||.||.|
RBAM_009600__    295 CCGGTGGCAATCATT-GCCGCGGCGGGCGGAGGAAAAGGAGGCATGAACG    343

BSNT_01609___    341 CGCTGAACAATATGAGAACTGTGATGCGGGGTGTCTACGCCAATGTCATT    390
                     |||||...||||||.|.||.||.||||||||.|||||.||.||||||||.
RBAM_009600__    344 CGCTGGCGAATATGCGGACGGTCATGCGGGGCGTCTATGCAAATGTCATC    393

BSNT_01609___    391 CCGAAGCAGCTGGTGCTT-GATCCGGTGCATATTGATGTTGAAAATGC--    437
                     |||||.|||||||| ||| ||.|||.|.||.||.||..|.||    ||  
RBAM_009600__    394 CCGAAACAGCTGGT-CTTAGACCCGATTCACATCGACATGGA----GCGC    438

BSNT_01609___    438 --TACAGTGGCTGAAAACATTAAGGAAAGCATAAAAGAGCTTGTCGAAGA    485
                       .||.||..||||..|.||....|..|||.|.||||||.|..|||||||
RBAM_009600__    439 CGGACCGTATCTGAGGATATGGCTGTCAGCCTGAAAGAGATGATCGAAGA    488

BSNT_01609___    486 ACTCAGCATGTTCGCAAAAACAGGAAATCCCGGCGTCTAA    525
                     .||.|..||||||.||||.|.|.|||||||||||||||.|
RBAM_009600__    489 GCTGAATATGTTCACAAACATAAGAAATCCCGGCGTCTGA    528


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