Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01625 and RBAM_009700

See Amino acid alignment / Visit BSNT_01625 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_01625___citA.1.9828.seq
#    -bsequence dna-align/RBAM_009700___citA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01625___citA-RBAM_009700___citA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01625___citA-RBAM_009700___citA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01625___citA
# 2: RBAM_009700___citA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1160
# Identity:     828/1160 (71.4%)
# Similarity:   828/1160 (71.4%)
# Gaps:         109/1160 ( 9.4%)
# Score: 2878.5
# 
#
#=======================================

BSNT_01625___      1 -------------ATGGTACATTACGGATT-AAAGGGAATTACATGTGTA     36
                                  ||.||       ||||| |||||| |||||.||||.|
RBAM_009700__      1 ATGAAATTGATTTATCGT-------GGATTGAAAGGG-ATTACTTGTGCA     42

BSNT_01625___     37 GAAACATCCATCAGCCATATTGATGGTGAAAAAGGGCGTCTGATTTACAG     86
                     |||||..|.||||||||.|||||.||.|||||.||||.|.|.||.||..|
RBAM_009700__     43 GAAACGGCTATCAGCCACATTGACGGAGAAAAGGGGCATTTAATATATCG     92

BSNT_01625___     87 AGGACATCATGCAAAAGACATCGCACTG-AATCATAGCTTTGAAGAAGCG    135
                     .||..||.||||.||.||.|||||.||| |||| .||.||||||||||||
RBAM_009700__     93 CGGCTATGATGCGAAGGATATCGCGCTGCAATC-CAGTTTTGAAGAAGCG    141

BSNT_01625___    136 GCTTATTTGATTTTATTTGGAAAACGGC-CTTCAACTGAAG------AAT    178
                     ||.|||.|.|||||     |||...||| ||||  ||||.|      |||
RBAM_009700__    142 GCGTATCTCATTTT-----GAACGGGGCGCTTC--CTGATGAGCGGCAAT    184

BSNT_01625___    179 TGCAGGTATTTAAAGATAAGCTGGCTGCGGAACGGAATCTTCCGGAACAT    228
                     |||..|..|||.|.||..|.||.||.||.||.||....||||||.|||||
RBAM_009700__    185 TGCTTGCGTTTCAGGAAGAACTTGCAGCCGAGCGCGGGCTTCCGAAACAT    234

BSNT_01625___    229 ATTGAGCG-CTTGATTCAATCACTGCCAAACAACATGGACGATATGTCGG    277
                      ||||.|| |||..|..||.|.||.||..|..|.||||||||.|||.|||
RBAM_009700__    235 -TTGATCGACTTACTGGAAACGCTTCCGGATGAAATGGACGACATGGCGG    283

BSNT_01625___    278 TGCTGAGAACGGTTGTTTCAGCATTGGGGGAAAATACGTACACATTCCAT    327
                     ||||||||||||.||||||||..|||||...|.||.|.|..||||   ||
RBAM_009700__    284 TGCTGAGAACGGCTGTTTCAGGTTTGGGCACAGATTCATTTACAT---AT    330

BSNT_01625___    328 CCG---AAAACAGAAGAAGCAATCCGGCTGATTGCAATCACGGCTTCCAT    374
                     |||   ||..|.||||||||.||....||||||||..||||..|..|.||
RBAM_009700__    331 CCGCCCAAGCCGGAAGAAGCGATTAAACTGATTGCCGTCACACCGACGAT    380

BSNT_01625___    375 CATTGCATACAGAAAAAGATGGACGCGCGGTGAACAA--GCA------AT    416
                     .|||||.||||||.|         .|||.||.|||||  |||      .|
RBAM_009700__    381 TATTGCGTACAGATA---------CCGCCGTAAACAAGGGCAGGAAGCGT    421

BSNT_01625___    417 TG-CACCTTCTTCCCAGTACGGACATGTCGAAAACTACTATTATATGCTC    465
                     || |||||....|.|..||||||||.||.||||||||.|..||||||||.
RBAM_009700__    422 TGTCACCTGAGGCGCGATACGGACACGTTGAAAACTATTTGTATATGCTG    471

BSNT_01625___    466 ACAGGCGAACAGCCTTCAGAGGCAAAAAAGAAAGCGCTTGAAACCTATAT    515
                     ||||||...|||||.||.|..||..|||||||||||||||||||.|||||
RBAM_009700__    472 ACAGGCAGGCAGCCGTCCGCAGCCCAAAAGAAAGCGCTTGAAACGTATAT    521

BSNT_01625___    516 GATTCTGGCCATGGAGCACGGCATGAACGCATCGACTTTTTCGGCACGAG    565
                     |||||||||.|||||||||||.|||||.||||||||||||||.||..|||
RBAM_009700__    522 GATTCTGGCGATGGAGCACGGGATGAATGCATCGACTTTTTCAGCGAGAG    571

BSNT_01625___    566 TCA-CGTTATCAACAGAGAGTGATTTAGTGTCAGCCGTCACGGCTGCTCT    614
                     ||| |||| ||.||.||....||.||||||||.||||||||.||.||.||
RBAM_009700__    572 TCACCGTT-TCGACTGAATCGGACTTAGTGTCTGCCGTCACTGCCGCACT    620

BSNT_01625___    615 CGGCACGATGAAAGGTCCGCTTCACGGAGGCGCTCCTTCTGCGGTGACAA    664
                     .||.|||||||||||.|||||.|||||||||||.|||||.|..||.||.|
RBAM_009700__    621 AGGTACGATGAAAGGGCCGCTGCACGGAGGCGCGCCTTCAGGCGTCACGA    670

BSNT_01625___    665 AAATGCTTGAAGACATTGGAGAAAAAGAACATGCTGAAGCATATCTGAAA    714
                     ||||||||||||||||.||..||||||||.||||.|||||.|||.||..|
RBAM_009700__    671 AAATGCTTGAAGACATCGGGAAAAAAGAAAATGCAGAAGCGTATTTGGCA    720

BSNT_01625___    715 GAAAAACTCGAA-------AAAGGAGAGCGCTTGATGGGATTCGGCCACA    757
                     |       ||||       |..|||||.|||.|||||||.|||||.||||
RBAM_009700__    721 G-------CGAAGCTTATGAGGGGAGAACGCCTGATGGGCTTCGGGCACA    763

BSNT_01625___    758 GGGTGTACAAAACAAAAGACCCGCGGGCAGAAGCTTTGAGACAGAAA-GC    806
                     ||||||||||||||||||||||||||||.|||||..||.| ||.||| ||
RBAM_009700__    764 GGGTGTACAAAACAAAAGACCCGCGGGCGGAAGCGCTGCG-CATAAAGGC    812

BSNT_01625___    807 AGAACAGGTGGCCGGCAATGA-CCGT-GATCTTGATCTT-GCGCTGCATG    853
                     .|||.|.|||||.||.||||| |||| |  ||||| ||| |||||..|||
RBAM_009700__    813 TGAAGAAGTGGCGGGAAATGATCCGTCG--CTTGA-CTTGGCGCTTTATG    859

BSNT_01625___    854 T--AGAAGCAGAAGCGATTCGTTTACTAGA--AATCTACAAACCGGGACG    899
                     |  |||||  |||||.||.||..|..||||  ||  ||.||.||.|||||
RBAM_009700__    860 TGGAGAAG--GAAGCCATCCGCCTGTTAGAGCAA--TATAAGCCCGGACG    905

BSNT_01625___    900 AAAGCTGTACACAAATGTTGAATTTTACGCGGCTGCAGTGATGAAGGCCA    949
                     .||||||||.||.|||||.||.||||||||.||.||.||||||.||||||
RBAM_009700__    906 GAAGCTGTATACGAATGTGGAGTTTTACGCAGCGGCTGTGATGCAGGCCA    955

BSNT_01625___    950 TCGATTTTGACGATGAGTTGTTTACTCCGACCTTTTCAGCAAGCCGAATG    999
                     |.|||.|.|||.||||.||.|||||.||||||||||||||||||.|||||
RBAM_009700__    956 TTGATGTCGACAATGATTTATTTACGCCGACCTTTTCAGCAAGCAGAATG   1005

BSNT_01625___   1000 GTAGGGTGGTGCGCCCATGTGCTGGAACAGGCAGAAAACAACATGATTTT   1049
                     |.|||.||||||||.||.|||||.||||||.|.|...||||||||||||.
RBAM_009700__   1006 GCAGGCTGGTGCGCACACGTGCTTGAACAGTCCGCTGACAACATGATTTA   1055

BSNT_01625___   1050 CCGCCCGTCAGCGAAATATACCGGTGCCATTCCCGA--------GGAAGT   1091
                     |.|.|||||.||||||||.|||||.||..|||||||        .|.|| 
RBAM_009700__   1056 CAGGCCGTCTGCGAAATACACCGGCGCTTTTCCCGAAACGGCTCAGCAG-   1104

BSNT_01625___   1092 TCTTTCATAA   1101
                      ||||.|   
RBAM_009700__   1105 -CTTTAA---   1110


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