Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01637 and RBAM_009750

See Amino acid alignment / Visit BSNT_01637 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:18
# Commandline: needle
#    -asequence dna-align/BSNT_01637___yhdL.1.9828.seq
#    -bsequence dna-align/RBAM_009750___yhdL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01637___yhdL-RBAM_009750___yhdL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01637___yhdL-RBAM_009750___yhdL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01637___yhdL
# 2: RBAM_009750___yhdL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity:     816/1116 (73.1%)
# Similarity:   816/1116 (73.1%)
# Gaps:          84/1116 ( 7.5%)
# Score: 2965.0
# 
#
#=======================================

BSNT_01637___      1 ATGAATGAAGAATTTAAAAAGCGTTTTGATCAATATAAAAATGGGGAAAT     50
                     |||||||||||||||||||||||||||.|.|||||.||||||||.|||||
RBAM_009750__      1 ATGAATGAAGAATTTAAAAAGCGTTTTTACCAATACAAAAATGGAGAAAT     50

BSNT_01637___     51 GAGCGACCAGGAAATGACTGCATTTGAGGAAGAACTTGAGAAGCTCGAAG    100
                     ||||||||.|||||||.|.||.|||||.|||||.||.||.|||||.||||
RBAM_009750__     51 GAGCGACCGGGAAATGGCCGCCTTTGAAGAAGAGCTGGAAAAGCTGGAAG    100

BSNT_01637___    101 TATATCAGGAACTGATTGACAGCGAACTAGAGGACGATAACGATTGGGAT    150
                     |.||||||||..|||||||.||||||.|..|||||||....||.|||||.
RBAM_009750__    101 TCTATCAGGAGTTGATTGAAAGCGAAATGCAGGACGACCGGGAATGGGAC    150

BSNT_01637___    151 CTCAGCATCAGTCCTGAAAAACAAAAAGCGATTTTAGCCTACGGCAAACG    200
                     .||.|||||||.||.||||||||.||.||.||||||.|.|||||.|||||
RBAM_009750__    151 GTCGGCATCAGCCCGGAAAAACAGAAGGCCATTTTATCATACGGAAAACG    200

BSNT_01637___    201 CAAGTCTTATTTGCGAATTTCTGTGCTTGCCGTCATTTCGACATTGATGA    250
                     |||.||.||||||||.|||||.||.||.||||||||.||.||.|||||||
RBAM_009750__    201 CAAATCGTATTTGCGGATTTCAGTTCTCGCCGTCATCTCCACTTTGATGA    250

BSNT_01637___    251 TTTTGCCGCTTTGTACGCTGGGAAGCTACCTCTATTACGGAATGGGTGGG    300
                     ||||||||||||||||..|.||||||||||||||||||||..||||.||.
RBAM_009750__    251 TTTTGCCGCTTTGTACATTAGGAAGCTACCTCTATTACGGTCTGGGAGGA    300

BSNT_01637___    301 AAACACAGCACCGGCAATGAGTTTATGGAAACTGCCGCAGTCACTGTAGC    350
                     |||.|.||||||||||||.|.||.|||||.||.||.|||||.||.||.||
RBAM_009750__    301 AAAGAAAGCACCGGCAATCAATTAATGGAGACCGCGGCAGTGACGGTGGC    350

BSNT_01637___    351 CCTGACC---ATGCCGAATGTTCTTGTTGATACTTCCGGACTGAAAAGCC    397
                        ||||   ||||||||.||.||.||.|||||.||||||||||||||||
RBAM_009750__    351 ---GACCACAATGCCGAACGTCCTCGTCGATACCTCCGGACTGAAAAGCC    397

BSNT_01637___    398 AAGTGAAGCTATTTGGAATGAATACGGAATTCCCGCTGCAAAAGCAGATT    447
                     |.||||||||.||||||||||||||||||||.|||.|||||||||||||.
RBAM_009750__    398 AGGTGAAGCTGTTTGGAATGAATACGGAATTTCCGTTGCAAAAGCAGATC    447

BSNT_01637___    448 GGCACGAAGACGGCTGCCGTAG--GGAATGAACGGGTTGAAATGTTTTAT    495
                     |||||.||.|||....||||.|  |||  ||||||.|||||||||||| |
RBAM_009750__    448 GGCACAAAAACGAAATCCGTCGGCGGA--GAACGGATTGAAATGTTTT-T    494

BSNT_01637___    496 A-ACAAAGTAAAAGCGCCGGCAGTAAACTACTATGACTTAGAAGTGAATA    544
                     | |.|..||.|||.||||.||.||.|||||||||||..||||.|.|    
RBAM_009750__    495 AGATACGGTCAAATCGCCTGCCGTTAACTACTATGATCTAGACGCG----    540

BSNT_01637___    545 TAACCGGC----CATTACTTTACACATCCTTC------AAACAAGTCTGA    584
                     ..||.|||    |||||.||..|.||||||||      |||      .||
RBAM_009750__    541 GCACAGGCAAAGCATTATTTCGCCCATCCTTCCGGCTTAAA------GGA    584

BSNT_01637___    585 ACAAACGACCGCAAAAGCAGAAAAAACGTTAAGCACATTGCCTGAAGGAA    634
                     ||..||||..|..|||||.|.|.|.||.||||..|.||||||||||||||
RBAM_009750__    585 ACGCACGATTGACAAAGCCGGACAGACATTAAAAAAATTGCCTGAAGGAA    634

BSNT_01637___    635 CGGTATCAGAGGTCTACCTTTCATATGACCGTGCATATCC-----GACAA    679
                     ..||..|.||||||||.|||||.||||||.|.||.||.||     ..|||
RBAM_009750__    635 GCGTGGCGGAGGTCTATCTTTCTTATGACAGGGCCTACCCTTCTTCTCAA    684

BSNT_01637___    680 AAGACGTGTATA----AC----AAATTCAAAGGCTATGATGTGAGCTTTT    721
                            |||||    ||    |||   |||   ||.|||||||..||||
RBAM_009750__    685 -------GTATATTCGACTTTTAAA---AAA---TACGATGTGAAGTTTT    721

BSNT_01637___    722 TGTGGAACGCAATCGAAACAGAGAAAAACACAAAT----AAGACAG--CT    765
                     |.||||||||..|||||||.|||||      ||||    |||||||  ||
RBAM_009750__    722 TATGGAACGCGGTCGAAACGGAGAA------AAATCTGAAAGACAGTCCT    765

BSNT_01637___    766 TCCACAGAACCTCTTGGCTATCCTGGAAAGGATTCAAAGTTCTTGGCCGC    815
                     |...||||.||..|.||.|.|||.||.||.|||||.|||.|..||.||  
RBAM_009750__    766 TATGCAGAGCCGTTAGGATTTCCCGGGAAAGATTCCAAGATGGTGTCC--    813

BSNT_01637___    816 CCTTAATACAAAAGGCAAGTCGA-------ATGGCGATCAGTTTATCAAC    858
                        |..|.|.|||.|||||  ||       |..|.||.||.||||||||.
RBAM_009750__    814 ---TCTTTCGAAACGCAAG--GACAGACAGACCGTGAACAATTTATCAAT    858

BSNT_01637___    859 GCCCTAAAATTCATGTCCAAACACGAAAAATGGGCTCAGGTCATTTCAAA    908
                     |||||..||||.||||||...||..||||||||||.||.|..||.||.||
RBAM_009750__    859 GCCCTTGAATTTATGTCCCGCCATAAAAAATGGGCGCATGCAATATCGAA    908

BSNT_01637___    909 ACGGAAAGACCTGAATGTAGATAACCGATTAGATTATGTAGAGAAAAACG    958
                     |||.||||||.|||||.|.|..|.||||.|.||.|||||.||..|..|||
RBAM_009750__    909 ACGCAAAGACATGAATCTTGGCAGCCGAATCGACTATGTTGAACATCACG    958

BSNT_01637___    959 GTGTCAATGTATACGGTTCGGTCGTTACAGGGCCAACCAAGGAAATCCAG   1008
                     |..|.||.||||||||.||.|||||.||.|||||.||.||.||||||.|.
RBAM_009750__    959 GAATGAACGTATACGGCTCTGTCGTGACGGGGCCGACAAAAGAAATCGAA   1008

BSNT_01637___   1009 CGCATGCTGAAAAATAAATCTGTAAAATCAGCGAATGTCGGCGAGGTGGA   1058
                     ||..||||||||||.|||.|.||||||.||||.||..||||.||||||||
RBAM_009750__   1009 CGTCTGCTGAAAAACAAAACAGTAAAAGCAGCAAACATCGGTGAGGTGGA   1058

BSNT_01637___   1059 ATTATGGAACTGGTAA   1074
                     |||||||||.||||||
RBAM_009750__   1059 ATTATGGAATTGGTAA   1074


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.