Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01641 and RBAM_009780

See Amino acid alignment / Visit BSNT_01641 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:18
# Commandline: needle
#    -asequence dna-align/BSNT_01641___yhdP.1.9828.seq
#    -bsequence dna-align/RBAM_009780___yhdP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01641___yhdP-RBAM_009780___yhdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01641___yhdP-RBAM_009780___yhdP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01641___yhdP
# 2: RBAM_009780___yhdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1343
# Identity:    1108/1343 (82.5%)
# Similarity:  1108/1343 (82.5%)
# Gaps:          16/1343 ( 1.2%)
# Score: 4618.0
# 
#
#=======================================

BSNT_01641___      1 TTGGACATAGTGAATTTGATTTTAGTTGCTGTTTTAATCGCCCTGACGGC     50
                     ||||||||.|||||||||||||||||.||.|||||||||||.||||||||
RBAM_009780__      1 TTGGACATTGTGAATTTGATTTTAGTCGCGGTTTTAATCGCGCTGACGGC     50

BSNT_01641___     51 ATTTTTCGTGGCATCTGAGTTTGCCATTATCAGAATCAGAGGCTCACGGA    100
                     |||||||||.||||||||||||||.||.|||||||||||||||||||||.
RBAM_009780__     51 ATTTTTCGTAGCATCTGAGTTTGCGATAATCAGAATCAGAGGCTCACGGG    100

BSNT_01641___    101 TCGATCAGCTGATCGCGGAAGGAAATAAAGCAGCAATAGCCGTAAAAAAA    150
                     |.||.|||||.||.||.||||||||||||||.|||||.|..||.||||||
RBAM_009780__    101 TTGACCAGCTTATAGCAGAAGGAAATAAAGCCGCAATCGGTGTCAAAAAA    150

BSNT_01641___    151 GTGACCACGCATCTTGATGAATATTTATCTGCGTGTCAGCTCGGAATTAC    200
                     ||||||||||||.|.|||||.||||||||.|||||.||||||||.||.||
RBAM_009780__    151 GTGACCACGCATTTAGATGAGTATTTATCGGCGTGCCAGCTCGGCATAAC    200

BSNT_01641___    201 ATTGACTTCCATCGGATTAGGGGTTTTAGGTGAATCAACGATCGAAAGGC    250
                     |||||||||||||||..|.||.||.|||||.|||||||||||.|||.|..
RBAM_009780__    201 ATTGACTTCCATCGGTCTTGGTGTCTTAGGCGAATCAACGATTGAACGCT    250

BSNT_01641___    251 TGCTTCACCCGCTTTTCGTCCAA--ATGAACGTTCCAGGTTCCCTTTCAC    298
                     |||||||.|||||||||  .|||  ||.|||||.|||.|.||..|.||.|
RBAM_009780__    251 TGCTTCATCCGCTTTTC--ACAAAGATAAACGTACCAAGCTCATTATCGC    298

BSNT_01641___    299 ATGTCATATCGTTTATTTTTGCGTATGCCATTATCACGTTCTTACACGTT    348
                     ||.|.||.||.||||||.|.||.|||||.||.||.||.|||||||||||.
RBAM_009780__    299 ATATTATTTCATTTATTCTCGCCTATGCGATCATTACATTCTTACACGTG    348

BSNT_01641___    349 GTTGTCGGAGAACTTGCACCTAAGACAGTCGCTATCCAAAAGGCGGAAGC    398
                     ||.||.|||||..|.||.||.||.||||||||.|||||.||.||||||||
RBAM_009780__    349 GTCGTGGGAGAGTTGGCGCCGAAAACAGTCGCCATCCAGAAAGCGGAAGC    398

BSNT_01641___    399 AGTGTCTATGCTGTTTGCGAAACCGCTGATTTGGTTTTACCGCATCGCGT    448
                     .||.||.|||||||||.||||||||||.||||||||||||||||||..||
RBAM_009780__    399 CGTTTCAATGCTGTTTTCGAAACCGCTCATTTGGTTTTACCGCATCATGT    448

BSNT_01641___    449 TCCCATTCATTTGGCTTTTGAACAATTCCGCACGGTTATTGACCAAAGCA    498
                     ||||.||.||.||||||.|||||||.|||||.||..|.||.||.||..|.
RBAM_009780__    449 TCCCGTTTATCTGGCTTCTGAACAACTCCGCCCGTCTTTTAACGAAGACG    498

BSNT_01641___    499 TTTGGCCTGGAGACCGTTTCAGAAAACGAACTGGCTCACTCAGAAGAAGA    548
                     ||.||.||||||||.||.||.|||||.||.||.||.|||||.||||||||
RBAM_009780__    499 TTCGGTCTGGAGACGGTGTCTGAAAATGAGCTTGCCCACTCTGAAGAAGA    548

BSNT_01641___    549 GCTGCGAATCATTTTGTCTGAAAGCTATAAAAGCGGTGAAATCAACCAAT    598
                     ||||||.||||||||.||.|||||||||||||||||||||||||||||.|
RBAM_009780__    549 GCTGCGCATCATTTTATCGGAAAGCTATAAAAGCGGTGAAATCAACCAGT    598

BSNT_01641___    599 CAGAGTTTAAATATGTGAATAAAATCTTTGAATTTGACGACAGGCTCGCG    648
                     |.||.||||||||.|||||.|||||||||||||||||||||||.||.||.
RBAM_009780__    599 CTGAATTTAAATACGTGAACAAAATCTTTGAATTTGACGACAGACTTGCA    648

BSNT_01641___    649 AAAGAAATTATGATTCCGCGGACCGAAATTGTCAGCCTTCCGCATGATAT    698
                     ||||||||.|||||||||||.||.|||||.|||||.||.|||||||||||
RBAM_009780__    649 AAAGAAATCATGATTCCGCGTACGGAAATCGTCAGTCTGCCGCATGATAT    698

BSNT_01641___    699 CAAGATTTCTGAAATGATGGACATCATTCAGATTGAAAAATATACCCGCT    748
                     |||.||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_009780__    699 CAAAATTTCTGAAATGATGGACATCATTCAGATTGAAAAATATACCCGGT    748

BSNT_01641___    749 ACCCTGTGGAAGAGGGCGATAAAGATAACATTATCGGGGTTATTAACATT    798
                     |||||||.||||||||.||.||||||||.||||||||.||||||||||||
RBAM_009780__    749 ACCCTGTCGAAGAGGGTGACAAAGATAATATTATCGGCGTTATTAACATT    798

BSNT_01641___    799 AAAGAAGTGCTGACAGCCTGCATAAGCGGTGAGGTATCTGTTGATTCCAC    848
                     ||||||||||||||.||||||||.|||||.||.|||||.||.||.||..|
RBAM_009780__    799 AAAGAAGTGCTGACCGCCTGCATCAGCGGCGAAGTATCAGTCGACTCGCC    848

BSNT_01641___    849 CATTTCTCAATTCGTCAACCCGATCATTCATGTCATTGAATCTGCGCCGA    898
                     .|||.|..|.||.|||||.||||||||.|||||.|||||.||.||.||||
RBAM_009780__    849 GATTACCGATTTTGTCAATCCGATCATCCATGTGATTGAGTCGGCACCGA    898

BSNT_01641___    899 TCCAAGACCTGCTTGTCAAAATGCAAAAAGAGAGGGTCCACATGGCCATT    948
                     |.||.||.||||||||.||||||||.||.||..||||.||.|||||.|||
RBAM_009780__    899 TTCACGATCTGCTTGTAAAAATGCAGAAGGAACGGGTTCATATGGCGATT    948

BSNT_01641___    949 TTGTCTGATGAATACGGCGGTACTGCCGGGCTTGTGACGGTTGAGGACAT    998
                     .||||.||||||||||||||.||.||.||||||||.||.|||||.|||||
RBAM_009780__    949 CTGTCGGATGAATACGGCGGAACCGCGGGGCTTGTCACCGTTGAAGACAT    998

BSNT_01641___    999 CATTGAGGAAATTGTCGGTGAAATCCGCGACGAATTTGATATTGATGAAA   1048
                     .|||||.|||||.|||||.||||||||.||.|||||||||||.|||||||
RBAM_009780__    999 TATTGAAGAAATCGTCGGGGAAATCCGTGATGAATTTGATATCGATGAAA   1048

BSNT_01641___   1049 TTAGCGAAATCCGCAAAATCGGCGAAGGCCATTATATTCTTGACGGAAAA   1098
                     |.|.|||||||||||||.|||||||.||||||||.||.||||||||.||.
RBAM_009780__   1049 TCAACGAAATCCGCAAACTCGGCGACGGCCATTACATGCTTGACGGCAAG   1098

BSNT_01641___   1099 GTGTTAATTGACCAAGTAAACGACCTGCTAGGCATTCATTTAGAGAACGA   1148
                     ||..|.|||||.|||||.|||||.||.||.|||||.||||||||.||.||
RBAM_009780__   1099 GTCCTGATTGATCAAGTGAACGAACTCCTCGGCATCCATTTAGAAAATGA   1148

BSNT_01641___   1149 AGAAGTCGACACAATCGGCGGCTGGTTCCTTACTCAAAAATACGATGTTG   1198
                     .||.||||||||.||.|||||||||||||||||.||.||||||||.||.|
RBAM_009780__   1149 CGAGGTCGACACCATTGGCGGCTGGTTCCTTACCCAGAAATACGACGTCG   1198

BSNT_01641___   1199 AAAAAGATGATTCCATCATCGAAGAGGGCTGCGAATTCATCATTAATGAA   1248
                     ||.||.|.||.||.||.||||||||.|||||.|||||.||||||||||||
RBAM_009780__   1199 AACAATACGACTCGATTATCGAAGAAGGCTGTGAATTTATCATTAATGAA   1248

BSNT_01641___   1249 ATTGACGGCCACCACGTGGCATATATTGAAGTGAAAAA------GCTTCA   1292
                     |||||||||||||||||.||||||||.|||||||||||      |.||  
RBAM_009780__   1249 ATTGACGGCCACCACGTCGCATATATCGAAGTGAAAAAACTGGCGTTT--   1296

BSNT_01641___   1293 AGAAGAAGAACTTCTGGAGACAGCTAACCAGCAGGAAGCATAA   1335
                         ||.|||||.|||||.||.||..|.||..|.|||||||||
RBAM_009780__   1297 ----GATGAACTGCTGGAAACCGCCGAACAAAAAGAAGCATAA   1335


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