Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01642 and RBAM_009790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:18
# Commandline: needle
# -asequence dna-align/BSNT_01642.1.9828.seq
# -bsequence dna-align/RBAM_009790___cueR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01642-RBAM_009790___cueR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01642-RBAM_009790___cueR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01642
# 2: RBAM_009790___cueR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity: 354/552 (64.1%)
# Similarity: 354/552 (64.1%)
# Gaps: 132/552 (23.9%)
# Score: 1413.5
#
#
#=======================================
BSNT_01642 1 ATGTTACTTCAATCAGATGATGAATTCCACAACTTCCAATTCCGGTCTGA 50
RBAM_009790__ 0 -------------------------------------------------- 0
BSNT_01642 51 AAAAAACAATAAACTTGTGCAAGACACCGTTCATATATTAAACTATTCTC 100
RBAM_009790__ 0 -------------------------------------------------- 0
BSNT_01642 101 ATAACTATAACGTGATGGTT-GGGAGGGATATAGATGGGGCTGAGACTTA 149
|| |||||||||.|||||||||||||||||||
RBAM_009790__ 1 ------------------TTGGGGAGGGATTTAGATGGGGCTGAGACTTA 32
BSNT_01642 150 TCGCATCAGTGAACTAGCGGCACTCGCCGGAGTAACGAAACGGACAGTTG 199
|||||||||||||.||||.|..||.|||||.|||||||||||.||.||.|
RBAM_009790__ 33 TCGCATCAGTGAATTAGCAGAGCTTGCCGGTGTAACGAAACGCACGGTGG 82
BSNT_01642 200 ATTATTATACGAATCTCGGTCTGCTTACGCCGGCCAGATCCTGTTCAAAT 249
||||.||.||.||.|||||.||..|.|.|||.|.|||.||.|||||.||.
RBAM_009790__ 83 ATTACTACACAAACCTCGGGCTTTTAAAGCCTGACAGGTCTTGTTCGAAC 132
BSNT_01642 250 TACCGTTACTACGACGAAAATGCACTCAAACGACTTATA-TTTATTGTAG 298
||.|||||||||||...|..||||||.||.|| .|||.| |||||.||.|
RBAM_009790__ 133 TATCGTTACTACGATACACTTGCACTTAATCG-GTTAAAGTTTATAGTCG 181
BSNT_01642 299 ATTGCAAGAAGCAGCGATTGGCCCTGTCCGATATTAAAGATCGACTGGAG 348
.|||.||.||||||||||||||||||||.|||||.|||||||||||||||
RBAM_009790__ 182 CTTGTAAAAAGCAGCGATTGGCCCTGTCTGATATAAAAGATCGACTGGAG 231
BSNT_01642 349 AACCAGTTTCCCTCTTCAGCTAAACTTG-ATGATGAAATTGGAAATCTGG 397
|||||||||||||||||||| |.|| .|||.||.|||||||||||||
RBAM_009790__ 232 AACCAGTTTCCCTCTTCAGC----CCTGCCTGACGATATTGGAAATCTGG 277
BSNT_01642 398 CATTAGAAATTGATCATATGAATCAAAACATCTCCGGAATCTTGCATCGG 447
|||..|||||||||||.|||||||||||||||||||..||||||.|||||
RBAM_009790__ 278 CATCGGAAATTGATCACATGAATCAAAACATCTCCGTGATCTTGAATCGG 327
BSNT_01642 448 TTTGAACGGC-TGAAGCCCGAGGATCGTGACAAGCTGAAAAGCAAA--CT 494
||||||..|| |||| ||.|||||.||.|.|.||||||||| ||| ||
RBAM_009790__ 328 TTTGAAAAGCTTGAA-CCAGAGGAGCGCGCCCAGCTGAAAA--AAAGGCT 374
BSNT_01642 495 CCCGCCTGAAAAGCTCGCCGTGTTCCAATCATTTATGCTGCTGTTAAGTT 544
..|.|||||||||||.||.|||.|.|||||||||||||||||||||||||
RBAM_009790__ 375 GGCTCCTGAAAAGCTTGCAGTGCTTCAATCATTTATGCTGCTGTTAAGTT 424
BSNT_01642 545 AA 546
||
RBAM_009790__ 425 AA 426
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