Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01646 and RBAM_009820

See Amino acid alignment / Visit BSNT_01646 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01646___yhdT.1.9828.seq
#    -bsequence dna-align/RBAM_009820___yhdT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01646___yhdT-RBAM_009820___yhdT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01646___yhdT-RBAM_009820___yhdT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01646___yhdT
# 2: RBAM_009820___yhdT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1440
# Identity:    1079/1440 (74.9%)
# Similarity:  1079/1440 (74.9%)
# Gaps:         105/1440 ( 7.3%)
# Score: 4071.5
# 
#
#=======================================

BSNT_01646___      1 ATGGACGATATTGACAGTCTGATTTTAATTGGCGTGCTCATTGCTTTAAC     50
                     ||||||||||||||||||.||||||||||.||.|||||||||||.|||||
RBAM_009820__      1 ATGGACGATATTGACAGTTTGATTTTAATCGGTGTGCTCATTGCGTTAAC     50

BSNT_01646___     51 CGCGTTTTTCGTTGCAAGCGAGTTTGCGATTGTTAGAGTGAGGAGATCCA    100
                     .||.||||||||.||.||.||.||||||||.||.||||||||.|||||||
RBAM_009820__     51 GGCATTTTTCGTGGCGAGTGAATTTGCGATCGTCAGAGTGAGAAGATCCA    100

BSNT_01646___    101 GAATAGATCAGCTTATCACAGAAGGAAACAAACGGGCGATACTCGCAAGG    150
                     ||||.||||||||.||..|||||||.||||.|||||||.|.|||||||.|
RBAM_009820__    101 GAATCGATCAGCTCATTTCAGAAGGGAACAGACGGGCGGTGCTCGCAAAG    150

BSNT_01646___    151 CGTGTCATTACAGATTTGGATGAATATTTATCCGCATCCCAGCTGGGCAT    200
                     |||.|||||||.|||.|.|||||.|||||||||||.||.|||||.|||||
RBAM_009820__    151 CGTATCATTACGGATCTTGATGAGTATTTATCCGCCTCGCAGCTTGGCAT    200

BSNT_01646___    201 TACATTGACATCAATCGGGCTTGGCGTACTGGGTGAGCCGGCCTTTGAAC    250
                     ||||.|.|||||.||||||||.|||||||||||.|||||.||.|||||||
RBAM_009820__    201 TACACTCACATCCATCGGGCTCGGCGTACTGGGAGAGCCTGCATTTGAAC    250

BSNT_01646___    251 GGCTGCTGCATCCACTGTTTGAACCGCTCGGCTTGCCAGACT--CGGTTT    298
                     ||.||||.|||||..|||||      |..|||.||  .|.||  |||.||
RBAM_009820__    251 GGATGCTTCATCCTGTGTTT------CAGGGCATG--GGGCTGCCGGATT    292

BSNT_01646___    299 CACATGC--AGCCT-------CTTTTGCAGTCGCGTACGGCTTGATCACG    339
                     |   |||  |||.|       |||||||.|..||||||||..||||.|||
RBAM_009820__    293 C---TGCTGAGCATGTGATTGCTTTTGCTGCGGCGTACGGGCTGATTACG    339

BSNT_01646___    340 TTCCTGCACGTTGTTGTAGGTGAACTGGCCCCGAAAACGGTCGCGATTCA    389
                     ||.|||||.||.||.||.|||||.||.||.||.||||||||.||||||||
RBAM_009820__    340 TTTCTGCATGTCGTCGTCGGTGAGCTTGCGCCTAAAACGGTTGCGATTCA    389

BSNT_01646___    390 AAAGGCAGAACAGCTGACTTTACTGATAGCGGGCCCTTTGCGTTTATTTT    439
                     |||.||.|||.|||||||.|||..|||.||.||.||..|.||.|||||||
RBAM_009820__    390 AAAAGCGGAAAAGCTGACGTTATGGATTGCCGGACCGCTTCGGTTATTTT    439

BSNT_01646___    440 ATTTGCTCCTGTTTCCGTTTATTTGGATCCTCAATGGATCGGCGCGGCTT    489
                     |..||.||.||||.||||||||||||.|.||.||.||.||.|||.|..||
RBAM_009820__    440 ACGTGTTCATGTTCCCGTTTATTTGGGTGCTGAACGGCTCCGCGAGAATT    489

BSNT_01646___    490 TTATGCGGGATGTTCGGTTTGAAGCCTGCGTCAGAACATGATGGTTCCCA    539
                     .|...|||..||..|||.||.|||||.||.||.||.|||||.||.|||||
RBAM_009820__    490 CTGACCGGTTTGGCCGGATTAAAGCCGGCATCTGAGCATGAAGGCTCCCA    539

BSNT_01646___    540 TTCTGAGGAAGAACTCAGGATGCTGTTATCTGAGAGTTTAAAAAACGGAG    589
                     .|||||.|||||.||..||||.|||.|.||.||.||||||||||||||||
RBAM_009820__    540 CTCTGAAGAAGAGCTGCGGATCCTGCTGTCAGAAAGTTTAAAAAACGGAG    589

BSNT_01646___    590 AGATTAATCCGTCTGAATATAAATATGTGAATAAGATTTTTGAATTTGAT    639
                     |.||.||||||||||||||||.||.|||||||||.||||||||.||||||
RBAM_009820__    590 AAATCAATCCGTCTGAATATACATTTGTGAATAAAATTTTTGATTTTGAT    639

BSNT_01646___    640 AATCGGATCGCCAAAGAAATTATGATACCGCGGAAGGAAATGGCTGCTGT    689
                     ||||||||||||||.|||||.|||||.|||.|.||.|||||.||.|||||
RBAM_009820__    640 AATCGGATCGCCAAGGAAATCATGATCCCGAGAAAAGAAATCGCGGCTGT    689

BSNT_01646___    690 GTCAACTGAGAT-GACGATGGCCGAGATGCTTGAAGTCATGCTGAAGGAA    738
                     .||.|||||.|| |||| ||.|.||.||||||||..|.||||||||.||.
RBAM_009820__    690 TTCCACTGATATGGACG-TGCCGGAAATGCTTGATATGATGCTGAAAGAC    738

BSNT_01646___    739 AAATACACGCGCTGGCCAGTCACAGATGGAGACAAAGACAGTGTGATCGG    788
                     |||||.|||||||||||.||.||.||.||.||||||||||||||.|||||
RBAM_009820__    739 AAATATACGCGCTGGCCCGTAACGGACGGGGACAAAGACAGTGTCATCGG    788

BSNT_01646___    789 TTTGGTCAATACGAAGCATTTGTTTTCTGATTTGCTGTTTATGACAGAAG    838
                     ..||.||||||||||||||.|.|||||.|||.||||||||||||||||||
RBAM_009820__    789 CATGATCAATACGAAGCATCTCTTTTCAGATCTGCTGTTTATGACAGAAG    838

BSNT_01646___    839 AAGAACGAATGAAGATGACG-ATCCATC----CGTATGTGAGGCCGGTCA    883
                     |.|||     .|||..||.| |||||||    |.||.||..|.|||||.|
RBAM_009820__    839 ATGAA-----AAAGCGGAAGTATCCATCACGTCATACGTCCGCCCGGTGA    883

BSNT_01646___    884 TCGAAGTGATTGAAACGATCCCGGTTCATGACTTGCTGATTAAAATGCAG    933
                     |.|||||.||.||.|||||||||.|.||.|||.|||||||.|||||||||
RBAM_009820__    884 TTGAAGTCATCGAGACGATCCCGATACACGACCTGCTGATAAAAATGCAG    933

BSNT_01646___    934 CGCGAGCGCATTCATATGGCTATATTGTCGGATGAATACGGAGGAACCTC    983
                     .|.||.||.||||||.||||.||||||||.|||||||||||.|||||.||
RBAM_009820__    934 AGAGAACGGATTCATTTGGCGATATTGTCTGATGAATACGGCGGAACGTC    983

BSNT_01646___    984 GGGACTTGTGACGACAGAGGATATTCTTGAGGAAATTGTCGGAGAGATCA   1033
                     .||.|||||||||||.||.||.||.|||||.|||||.|||||.||.||||
RBAM_009820__    984 CGGTCTTGTGACGACCGAAGACATCCTTGAAGAAATCGTCGGCGATATCA   1033

BSNT_01646___   1034 GAGATGAATTTGATGAAGATGAACAGCCGCTGATCCAAAAGCTTGGCGAC   1083
                     ||||.|||||||||||.||.||||||||||.|||.||||||||...|||.
RBAM_009820__   1034 GAGACGAATTTGATGAGGACGAACAGCCGCAGATTCAAAAGCTGTCCGAA   1083

BSNT_01646___   1084 GGCCATTATGTGATGGATGGAAAGGTTCGGATCGATCAGGTGAA-CAGCC   1132
                     .|||||||||||.||||.||||||||||||||.||||||||||| || .|
RBAM_009820__   1084 CGCCATTATGTGCTGGACGGAAAGGTTCGGATTGATCAGGTGAATCA-TC   1132

BSNT_01646___   1133 TTCTTGGCGCATCGATTCAAGAAGACGTCGATACGATCGGCGG------G   1176
                     ||||.||||||..||||.||||.||.|||||.|||||||||||      |
RBAM_009820__   1133 TTCTCGGCGCAGGGATTGAAGAGGAAGTCGACACGATCGGCGGTCTTGTG   1182

BSNT_01646___   1177 CTGATATTAAAAGAAAACATCGATATTGA------GGCTGGTGAATCCAT   1220
                     |||     |||.|.|       |||||||      .||.|||||.||.||
RBAM_009820__   1183 CTG-----AAACGGA-------ATATTGACATCTGTGCGGGTGAGTCGAT   1220

BSNT_01646___   1221 TCGCATCGG-------------TTCATATACGATAAAGGTGCTGAAGATG   1257
                     .|..||.||             .||||||    ||        ||| |||
RBAM_009820__   1221 ACAAATAGGGGGATACACTGCCCTCATAT----TA--------GAA-ATG   1257

BSNT_01646___   1258 GACGGCCGATTAATCAAGCAAATCGATATAAAAGAAGAA----GCCAGCA   1303
                     ||||||||.||.||.||.||..|.||..|.|||||||||    ||| || 
RBAM_009820__   1258 GACGGCCGGTTTATTAAACAGCTTGAACTCAAAGAAGAACAGGGCC-GC-   1305

BSNT_01646___   1304 ACACAACCGG--GATTACGGCGC-----ACCACAAGCTGCCGCTGCCTGA   1346
                           ||||  |.|.|.||..|     |||.|.|||||||..|||||||
RBAM_009820__   1306 ------CCGGGCGGTCAGGGTACAATAAACCGCCAGCTGCCCGTGCCTGA   1349

BSNT_01646___   1347 GCCTGTGATGCTGAACAGTGCAACCTTGAGCGAGAAATAA   1386
                     ..|.||.|||||..|.|..||||||||||||||.||||||
RBAM_009820__   1350 AACGGTCATGCTTCATAACGCAACCTTGAGCGAAAAATAA   1389


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