Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01653 and RBAM_009870

See Amino acid alignment / Visit BSNT_01653 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01653___yhdY.1.9828.seq
#    -bsequence dna-align/RBAM_009870___yhdY.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01653___yhdY-RBAM_009870___yhdY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01653___yhdY-RBAM_009870___yhdY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01653___yhdY
# 2: RBAM_009870___yhdY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1145
# Identity:     835/1145 (72.9%)
# Similarity:   835/1145 (72.9%)
# Gaps:          58/1145 ( 5.1%)
# Score: 2902.0
# 
#
#=======================================

BSNT_01653___      1 ---ATGCCGGATTATCTGCAGCAGTATTTTACGCTTGATAACATCATACA     47
                        |||.|..|.|.||.| |||  |.||||||.|||||..|.||..|.||
RBAM_009870__      1 ATGATGACACAATTTCAG-AGC--TTTTTTACTCTTGACCATATTTTGCA     47

BSNT_01653___     48 AATCGGCATCAGCTTGGCGATTTT-GCTGGTGTTTCTTATACTGAGAAAA     96
                     .|||.|.||||||.|.|..||||| || ||..|||||..|..||||||||
RBAM_009870__     48 GATCAGTATCAGCATCGGAATTTTAGC-GGCTTTTCTCGTTTTGAGAAAA     96

BSNT_01653___     97 -TTATTCACAAGATATTTCTTTAACTTGCTTTTTAATTTGACAAACCGGC    145
                      |..||..||| |||.||.|||.|..|..|||..||.|||.|.|||..||
RBAM_009870__     97 CTGTTTGTCAA-ATACTTTTTTCAGCTCATTTACAAATTGGCGAACAAGC    145

BSNT_01653___    146 CGAAAACAGAAATTTTTAAACAGGTGGTTCTGGCGTTTGATAAGCCGGCC    195
                     |||||||.||.||.||.||||||.|.|...|.||||||||.|||||||||
RBAM_009870__    146 CGAAAACCGACATATTCAAACAGATTGCCGTAGCGTTTGACAAGCCGGCC    195

BSNT_01653___    196 AGATGGTTTTTTGTTGCCCTTGGGCTGTTTTTAGCGATCCGGTATTCACC    245
                     |||||||||||.||.||.||.||.||.|||||.|||||...||||||.||
RBAM_009870__    196 AGATGGTTTTTCGTGGCGCTGGGTCTATTTTTGGCGATTGAGTATTCGCC    245

BSNT_01653___    246 GTTTTTAGATGAGCAAATACCGGTCA---TCAGCAAAATATACCGCTCAC    292
                     |||||||||.|.|||.||   ||.||   |||..|||.|.||||||||.|
RBAM_009870__    246 GTTTTTAGACGGGCAGAT---GGACATTGTCAAAAAATTGTACCGCTCTC    292

BSNT_01653___    293 TGATTGTGGCGCTCTTGTGCTGGGGTCTTTGTAATTTGACCGCAACATCG    342
                     ||||.||.|||||..|...||||||.|||||.|||.||||..|..|.||.
RBAM_009870__    293 TGATCGTTGCGCTGATCGCCTGGGGGCTTTGCAATCTGACATCGGCGTCT    342

BSNT_01653___    343 TCGTTTATCTTCCATAAGGTGAATCAGCGCTTCGAGCTTGACATGGATGA    392
                     ||||||.|.||.|||||.||.|||||||||||.||||||||.||||||||
RBAM_009870__    343 TCGTTTTTATTTCATAAAGTCAATCAGCGCTTTGAGCTTGATATGGATGA    392

BSNT_01653___    393 CATTCTGGCCCCGTTTTTATCCAAATTGCTCCGTTTTGTGATCATTGCGC    442
                     ||||.||||.||||||||||||||..||||.||.|||||.||..|.||||
RBAM_009870__    393 CATTTTGGCGCCGTTTTTATCCAAGGTGCTGCGCTTTGTCATTCTCGCGC    442

BSNT_01653___    443 TCAGTGTCAGTGTGATCGCTCAGGAATTCAATTATGATGTCAACGGATTT    492
                     ||||.||||||||||||||.||||||||||||||||||||.|||||.||.
RBAM_009870__    443 TCAGCGTCAGTGTGATCGCGCAGGAATTCAATTATGATGTAAACGGGTTC    492

BSNT_01653___    493 GTAGCGGGCCTTGGTCTTGGCGGACTGGCTTTTGCGCTTGCCGCGAAGGA    542
                     ||.||.||.||.||.|||||||||.||||.||.||||||||.||.||.||
RBAM_009870__    493 GTGGCCGGACTCGGACTTGGCGGATTGGCCTTCGCGCTTGCGGCTAAAGA    542

BSNT_01653___    543 TACCATCAGCAACTTCTTTGGCGGTATTATCATTATTACTGAAAAGCCGT    592
                     |||.|||||.||.||.||.|||||.||||||||.|||||.||||||||||
RBAM_009870__    543 TACGATCAGTAATTTTTTCGGCGGCATTATCATCATTACGGAAAAGCCGT    592

BSNT_01653___    593 TTACAATTGGTGACTGGGTGGAGACGTCGACAGTAACAGGATCAGTCGAG    642
                     ||||.||.||.||||||||.||||||||..|.|||||.||....||.||.
RBAM_009870__    593 TTACGATCGGCGACTGGGTCGAGACGTCATCTGTAACGGGGGGCGTTGAA    642

BSNT_01653___    643 GATATTACCTTTAGGAGCACGAGATTCAGAACAGCACAGGGGGCGCTTGT    692
                     |||||.||.||..|.|||||.||.|||.|.||.||.||||||||||||||
RBAM_009870__    643 GATATCACATTCCGAAGCACAAGGTTCCGCACGGCGCAGGGGGCGCTTGT    692

BSNT_01653___    693 AACGGTCCCGAACTCTACGCTGTCGATGGAAGCGATCACGAACTGGACAA    742
                     .||.||.||.||.||.||||||||.||||||||.|||||.||||||||.|
RBAM_009870__    693 TACCGTGCCCAATTCAACGCTGTCCATGGAAGCCATCACAAACTGGACGA    742

BSNT_01653___    743 GAATGACTAAACGCCAGATTACGTTTTCCATCCATGTGTCCTACGCTACG    792
                     |.|||||.||.||||||.|.|||||||||.|.|.|||.||.||.||.|||
RBAM_009870__    743 GGATGACGAAGCGCCAGGTCACGTTTTCCGTTCGTGTTTCTTATGCGACG    792

BSNT_01653___    793 CCGATTGAGAACCTT--GAACGCTCCATTCATTC---TCTCAGAACAATG    837
                     ||||||  ||.|.||  ||.||.|.|| |||  |   .||||||..||||
RBAM_009870__    793 CCGATT--GATCGTTTAGAGCGGTGCA-TCA--CAAGGCTCAGAGAAATG    837

BSNT_01653___    838 C-TCTTAGAGCATGAGGGCGTTGATAATGAAACAATCATGGTCAACTTTG    886
                     | ||.| ||.|||||.|||||..||.||||.||.||.|||||.|||||||
RBAM_009870__    838 CTTCGT-GAACATGAAGGCGTGCATGATGATACGATTATGGTTAACTTTG    886

BSNT_01653___    887 ATACGTTTGCCGACAGCTACTACAATTTATTTTTTAACTTCTATACAAAA    936
                     |...||||||.||||||||.||.|||.|.|||||.|||||.||.|||||.
RBAM_009870__    887 ACGTGTTTGCGGACAGCTATTATAATCTGTTTTTCAACTTTTACACAAAG    936

BSNT_01653___    937 ACGACAGTTTGGGCTGAAAACCTTAATATTAGA-------GAGGATATCA    979
                     ||.|..||.|||||.||||.|       ||.||       .|||||||||
RBAM_009870__    937 ACCATCGTCTGGGCGGAAAGC-------TTGGACGTGCGGCAGGATATCA    979

BSNT_01653___    980 ACTATAAAATTATTGAGATTTTAGGTGCAGAAGGTGTCCAGTTTGCATAT   1029
                     ||......||||||||.|||||.|.||..|||||.||..|.||.||.|||
RBAM_009870__    980 ACCGCCGGATTATTGATATTTTTGCTGAGGAAGGCGTGGAATTCGCCTAT   1029

BSNT_01653___   1030 CCCGGCCA-AATGGTTGTT-GTCAAGC--AAAAG-CACGAAAGCGACCCA   1074
                     ||.||||| ||||  |.|| ||.||.|  ||||| |||||   .||.||.
RBAM_009870__   1030 CCGGGCCAGAATG--TATTCGTAAAACAGAAAAGCCACGA---TGATCCG   1074

BSNT_01653___   1075 TTCCAGGTGA---ATCTAAATAAAGAGGAAAAGGAACGGGCTTAA   1116
                     .|.||.||||   |||   ||...|..|||||.||||||||.|||
RBAM_009870__   1075 GTTCATGTGAAGGATC---ATTCCGGAGAAAAAGAACGGGCATAA   1116


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