Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01657 and RBAM_009900

See Amino acid alignment / Visit BSNT_01657 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01657___dat.1.9828.seq
#    -bsequence dna-align/RBAM_009900___dat.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01657___dat-RBAM_009900___dat.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01657___dat-RBAM_009900___dat.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01657___dat
# 2: RBAM_009900___dat
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 879
# Identity:     606/879 (68.9%)
# Similarity:   606/879 (68.9%)
# Gaps:          57/879 ( 6.5%)
# Score: 2004.5
# 
#
#=======================================

BSNT_01657___      1 ATGAAGGTTTTAGTCAATGGCCGGCTGATTGGGCGCAGTGAAGCATCAAT     50
                     ||||||...|||||.||.||||.|.||.|||..||....|||||..||.|
RBAM_009900__      1 ATGAAGACATTAGTAAACGGCCAGTTGGTTGATCGTGAAGAAGCGGCAGT     50

BSNT_01657___     51 CGATTTGGAAGATCGCGGTTATCAGTTTGGTGACGGCATCTATGAAGTGA    100
                     .|||.|.||.||.|||||.|||||.||.||||||||..|.|||||.||.|
RBAM_009900__     51 TGATATTGAGGACCGCGGATATCAATTCGGTGACGGTGTGTATGAGGTCA    100

BSNT_01657___    101 TCAGGGTGTACAAAGGAGTATTGTTCGGTTTACGTGAGCATGTAGAGCGT    150
                     ||||.|||||.||.||.|..||.||||||.|.|||||||||.|.|..|||
RBAM_009900__    101 TCAGAGTGTATAACGGCGCCTTATTCGGTCTGCGTGAGCATATTGCCCGT    150

BSNT_01657___    151 TTTTTCAGAAGTGCTGCTGAAATCGGAATTTCACTGCCATTCAGTAT---    197
                     .||||||||||.||.||.||||||||.||..|.|||||.|||    |   
RBAM_009900__    151 CTTTTCAGAAGCGCCGCAGAAATCGGCATCACCCTGCCGTTC----TCCG    196

BSNT_01657___    198 -AGAAGATCTCGAGTGGGACCTGCAAAAGCTTGTACAGGAAAATGCGGTC    246
                      |||.||..|.||.|||||.|||||||||||.|||||||||||.....||
RBAM_009900__    197 CAGAGGACATAGAATGGGATCTGCAAAAGCTCGTACAGGAAAACAAACTC    246

BSNT_01657___    247 AGTGAGGGAGCGGTATACATTCAGACAACAAGAGGTGTGGCCCCGCGAAA    296
                     |.|||.||.|.|||.||.||.|||||.||.|||||...|||.|||||.||
RBAM_009900__    247 ATTGACGGCGGGGTCTATATACAGACGACGAGAGGGAAGGCGCCGCGGAA    296

BSNT_01657___    297 ACACCAGTATGAAGCCGGCCTCGAGCCGCAGACTACTGCCTATACGTTTA    346
                     .|||||||||||.|..||..|.||.||||||||.||.||.||.||.|||.
RBAM_009900__    297 GCACCAGTATGACGAAGGATTGGAACCGCAGACGACGGCATACACCTTTT    346

BSNT_01657___    347 CGGTGAAAAAACCGGAGCAAGAGCAGGCATACGGAGTGGCGGCCATTACA    396
                     |.||.|||||||||||..|.||.||...|..|||||.|..||||||.||.
RBAM_009900__    347 CAGTAAAAAAACCGGAAAATGAACAAAAAGCCGGAGCGCAGGCCATAACG    396

BSNT_01657___    397 GATGAGGATCTTCGCTGGTTAAGATGTGATATCAAAAGTCTGAATTTACT    446
                     |..||.||....||||||.|.||.|||||.||.||.||||||||||||||
RBAM_009900__    397 GCGGAAGACAAACGCTGGCTGAGGTGTGACATTAAGAGTCTGAATTTACT    446

BSNT_01657___    447 GTATAATGTCATGACGAAGCAAAAGGCCTATGAAGCGGGAGCATTTGAAG    496
                     |||||||||.||||..||.|||||.|||||||||||.||.||.|.|||||
RBAM_009900__    447 GTATAATGTGATGATTAAACAAAAAGCCTATGAAGCAGGCGCTTATGAAG    496

BSNT_01657___    497 CCATTTTACTTAGGGACGGCGTTGTTACGGAGGGTACATCCTCTAACGTT    546
                     |..|..|..|.||||||||.|..||.|||||.||.||.||.||.||.||.
RBAM_009900__    497 CGGTGCTGATAAGGGACGGAGCGGTCACGGAAGGAACCTCTTCCAATGTA    546

BSNT_01657___    547 TATGCCGTTATCAACGGCACGGTGCGAACACATCCGGCTAACCGGCTCAT    596
                     ||.|||||.||.||||||||.||.||.||.|||||.||.||...|||.||
RBAM_009900__    547 TACGCCGTCATAAACGGCACTGTCCGGACGCATCCTGCAAATGAGCTGAT    596

BSNT_01657___    597 TCTCAATGGAATTACACGGATGAATATTTTAGGACTGATTGAGAAGAATG    646
                     |.|.||.||.|||||.||||||||..|.||||..|||| ||| ||||   
RBAM_009900__    597 TTTAAACGGCATTACGCGGATGAAACTGTTAGAGCTGA-TGA-AAGA---    641

BSNT_01657___    647 GGATTAAACTGGAT------------GAGACTCCTGTCAGTGAAGAAGAG    684
                          ||||  |||            ||||...||.|.|..|||||.|| 
RBAM_009900__    642 -----AAAC--GATATTGAGGTGCGGGAGAAGGCTCTTACCGAAGACGA-    683

BSNT_01657___    685 TTGAAACAG----GCGGAAGAGATCTTTATTTCGTCAACGACGGCAGAAA    730
                        |..|||    |||||.||.||.||.||.||||||||||||||.|||.
RBAM_009900__    684 ---ACTCAGGGATGCGGATGAAATTTTCATCTCGTCAACGACGGCTGAAT    730

BSNT_01657___    731 TTATTCCGGTTGTGACGCTCGATGGACAATCGGTCGGAAGCGGGAAACCC    780
                     |.||.|||.|.||.||.||.||.||..||.|||||||||||||....||.
RBAM_009900__    731 TAATCCCGATCGTAACCCTTGACGGGAAACCGGTCGGAAGCGGAGTGCCG    780

BSNT_01657___    781 GGACCGGTGACCAAACAGCTTCAGGCTGCTTTTCAAGAAAG-----CATT    825
                     |||||.||..|||||..|.||||||..|||||||     ||     ||||
RBAM_009900__    781 GGACCTGTAGCCAAAACGATTCAGGAGGCTTTTC-----AGTCGCACATT    825

BSNT_01657___    826 CAACAGGCTGCTAG-----CATTTCATAA    849
                     ||.|||| .|||.|     || .||||||
RBAM_009900__    826 CAGCAGG-AGCTCGGGGTTCA-GTCATAA    852


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01657 and RBAM_009900

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
