Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02774 and RBAM_009910

See Amino acid alignment / Visit BSNT_02774 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:43
# Commandline: needle
#    -asequence dna-align/BSNT_02774___pksA.1.9828.seq
#    -bsequence dna-align/RBAM_009910___pksA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02774___pksA-RBAM_009910___pksA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02774___pksA-RBAM_009910___pksA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02774___pksA
# 2: RBAM_009910___pksA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity:     421/642 (65.6%)
# Similarity:   421/642 (65.6%)
# Gaps:          84/642 (13.1%)
# Score: 1363.0
# 
#
#=======================================

BSNT_02774___      1 ATGCCAAAACAAATTGACCATGAGAAAAGAAGAAAACAAATTGCAGAAGC     50
                     |||||.|||..|||.||.|||||.|||||||||||||||||.||.|||||
RBAM_009910__      1 ATGCCTAAAATAATCGATCATGAAAAAAGAAGAAAACAAATAGCCGAAGC     50

BSNT_02774___     51 AACGTGGCG--CGTCATTTTAGAACGAGGGATGGAGGGAGCATCAGCCAG     98
                     .||.|||||  ||  |||||.||.||.||.|||||.|||||..|||..||
RBAM_009910__     51 CACTTGGCGGACG--ATTTTGGAGCGGGGAATGGAAGGAGCGACAGTGAG     98

BSNT_02774___     99 GAACATTGCAAAGGAAGCAGGATTGTCATTAGGTGCACTGCGCCATTATT    148
                     .|||||.||..|||||||.||..|.||.|||||.||.|||.|.||.||||
RBAM_009910__     99 AAACATCGCCCAGGAAGCGGGTCTTTCTTTAGGCGCGCTGAGGCACTATT    148

BSNT_02774___    149 TCTCTACACAGGATGAATTGCTTGCTTT-------TGCAATGAAACTTGT    191
                     ||.|.||.||||||||       |||||       |||.||||.|||.||
RBAM_009910__    149 TCACCACCCAGGATGA-------GCTTTTAGGGTATGCGATGACACTCGT    191

BSNT_02774___    192 CCAAGAAAAGGTGACTGACCGAATTAAGGACATTGCAGTGAGGGATTTGC    241
                     ..|||||||.|.|.|.|.|.|||||||.||..||||..|||..|||.|||
RBAM_009910__    192 AAAAGAAAAAGCGGCCGCCAGAATTAACGAAGTTGCCATGAAAGATCTGC    241

BSNT_02774___    242 TCCCTAAGGAAAAAGTGTTGCAAATTTTGCTTGAAATGGTCCCAACGAAT    291
                     ..||.||.|||||||.|.|||...|..||||||||||..||||.||..||
RBAM_009910__    242 CGCCGAAAGAAAAAGCGGTGCGTCTGATGCTTGAAATCATCCCGACAGAT    291

BSNT_02774___    292 GAAGAAACGATTAGAGAGATGGAGGTTTGGTTTGCTTTTACTGCTTACGC    341
                     |||||||||||....||.||||||||.|||||.|||||.||.|||||.||
RBAM_009910__    292 GAAGAAACGATGGCTGAAATGGAGGTATGGTTCGCTTTCACAGCTTATGC    341

BSNT_02774___    342 CAGACATAA---AAAGGATATGTTTGATGCGAATCATGACGGGATTTTCA    388
                     |||||||||   |.|.||   ||||.|..|..|.||.||||||||.||  
RBAM_009910__    342 CAGACATAAGGGAGAAGA---GTTTCAACCCCAGCAGGACGGGATCTT--    386

BSNT_02774___    389 GCGGCAT------GCGGAATCTGATTGCCTATTTAGATG--AATCCGATT    430
                       |||||      ||||  ||||||||.||...|.||||  |||..|.||
RBAM_009910__    387 --GGCATATATCCGCGG--TCTGATTGACTGGCTGGATGAAAATAAGCTT    432

BSNT_02774___    431 TACTGAAGCAGAATGCTGATAAAGACATTGAAGCTGAGAGACTTTACGCG    480
                       |||||.|.||||..|||||||||.||.|||||.||||.|.|.|||||.
RBAM_009910__    433 --CTGAAACCGAATCTTGATAAAGAGATCGAAGCGGAGAAAATGTACGCC    480

BSNT_02774___    481 CTTGTTGACGGCTTGGCTTTACATGCCATGCTTGACCCTGTGCG-CGTGA    529
                     .|.|..|||||.|||||..|.||||||||||||||.||||.||| |.|..
RBAM_009910__    481 ATCGCCGACGGATTGGCGCTGCATGCCATGCTTGAACCTGAGCGTCTTTC    530

BSNT_02774___    530 ATAAAGACCGAATTAAG------CGGGTCATTATGCAGCATGTAGAGTCA    573
                     | |||||      .|||      ||.||..|..|.||||||.|.||.||.
RBAM_009910__    531 A-AAAGA------GAAGATCTCCCGTGTGCTCGTTCAGCATATCGAATCT    573

BSNT_02774___    574 ATTTGCGTGGAAGGTAAACGTGAGACAGAAGAGAAGGAATAA    615
                     .|||          |.|.| |||                   
RBAM_009910__    574 CTTT----------TTATC-TGA-------------------    585


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