Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01665 and RBAM_009950

See Amino acid alignment / Visit BSNT_01665 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_01665___yheH.1.9828.seq
#    -bsequence dna-align/RBAM_009950___yheH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01665___yheH-RBAM_009950___yheH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01665___yheH-RBAM_009950___yheH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01665___yheH
# 2: RBAM_009950___yheH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2099
# Identity:    1493/2099 (71.1%)
# Similarity:  1493/2099 (71.1%)
# Gaps:         154/2099 ( 7.3%)
# Score: 5133.5
# 
#
#=======================================

BSNT_01665___      1 ATGAAAATAGGAAAAACGTTATGGAGATACGCACTTCTTTATCGAAAATT     50
                     |||||.|..||.|.||..|||||||..|||||.||||..|||...||..|
RBAM_009950__      1 ATGAAGACCGGGAGAAGATTATGGAATTACGCGCTTCAATATAAGAAGCT     50

BSNT_01665___     51 GCTGATCA----CAGCCGTCCTTTTGCTAACTGTTGCCGTCGGTGCAGAA     96
                     |||||| |    |.|.|||||   ||||.|.|.||||.|||||..|.||.
RBAM_009950__     51 GCTGAT-ATGGGCGGTCGTCC---TGCTCATTATTGCGGTCGGCACTGAG     96

BSNT_01665___     97 CTGACTGGGCCCTTTATTGGCAAAAAAATGATAGACGACCATATCCTCGG    146
                     |||||.||.||.|||||.||.|||||||||||.||||||||.||.|||||
RBAM_009950__     97 CTGACCGGCCCGTTTATCGGAAAAAAAATGATTGACGACCACATTCTCGG    146

BSNT_01665___    147 CATTGAGAAAACATGGTATGAAG---CTGCGGAAAAAGATAAAAATGCCG    193
                     ||||||.|||||||||..|.|||   ||||||   |.|||......||||
RBAM_009950__    147 CATTGAAAAAACATGGGTTAAAGCCTCTGCGG---ACGATCCGGGCGCCG    193

BSNT_01665___    194 TTCAGTTTCACGGCGTC-TCA-TATGTCAGAGAGGACCGATTGCAGGAGC    241
                      ||||.||| |||.|.| |.| ||||||||.||||||||         ||
RBAM_009950__    194 -TCAGGTTC-CGGGGGCATGATTATGTCAGGGAGGACCG---------GC    232

BSNT_01665___    242 CTGTTTCAAA----------AGCAAA-----AGAAGCGCATATTTATCAA    276
                          |||||          | ||||     |||.|||||.|||||||||
RBAM_009950__    233 -----TCAAACCGGGGGCGGA-CAAAACCGGAGAGGCGCACATTTATCAA    276

BSNT_01665___    277 GTGGGAATGGCGTTCTATTTTGTTGATCAGGCTGTCAGCTTCGACGGGAA    326
                     ||.||...||..|.||||||||||||.|...|.|||||.||.|||||.||
RBAM_009950__    277 GTCGGTGCGGGCTACTATTTTGTTGACCGTCCCGTCAGTTTTGACGGAAA    326

BSNT_01665___    327 TAGAACGGTTTCTGACGGGAAGCTGACGATCACAAAAGG-AGACAAGAGC    375
                     ..|..||||.||||||||...||||||.||..||||.|| |.|.|| |||
RBAM_009950__    327 CCGTTCGGTGTCTGACGGCCGGCTGACAATATCAAACGGTAAAGAA-AGC    375

BSNT_01665___    376 CGGGCATATGCTGCCGAAAAGCTGACTAAG-CAGGAACTTTTCCAGTTCT    424
                     .||.|||||.|.||| |..|..|.|..||| |||||..||||.||.||.|
RBAM_009950__    376 AGGTCATATCCCGCC-ATTACGTTATCAAGACAGGAGATTTTTCAATTTT    424

BSNT_01665___    425 ATCAGCCGGAAATAAAGGGAATGGTGTTAC--TGATCTGCC-TGTATGGG    471
                     |.|..||.||||||||.|||.||.||  ||  ||| |.||| |.||.|.|
RBAM_009950__    425 ACCGTCCCGAAATAAAAGGATTGCTG--ACGTTGA-CCGCCATTTACGCG    471

BSNT_01665___    472 GGCTTGCTTGTGTTTTCGGTATTCTTTCAATACGGACAGCATTATCTGCT    521
                     ||..||||..|||||||.||||..|||||.|||||.||||||||||||||
RBAM_009950__    472 GGACTGCTCATGTTTTCCGTATGTTTTCATTACGGCCAGCATTATCTGCT    521

BSNT_01665___    522 GCAGATGAGCGCCAATCGGATTATTCAAAAGATGAGGCAGGACGTGTTTT    571
                     |||||||.|.||.||.|||||.||.||....|||||||||||.||.||||
RBAM_009950__    522 GCAGATGGGAGCGAACCGGATCATACAGCGCATGAGGCAGGATGTATTTT    571

BSNT_01665___    572 CGCACATACAGAGTATGCCGATTCGCTATTTTGACAACCTTCCGGCCGGA    621
                     |.|||||.||||..||||||||.|||||.|||||.||.||.||.||||||
RBAM_009950__    572 CACACATTCAGAAAATGCCGATCCGCTACTTTGATAATCTGCCTGCCGGA    621

BSNT_01665___    622 AAAGTCGTTGCGCGGATTACCAATGATACGGAGGCTATCAGGGATTTATA    671
                     ||||||||.||.||.|||||.|||||.||.||.||..|||||||||||||
RBAM_009950__    622 AAAGTCGTGGCCCGCATTACGAATGACACAGAAGCGGTCAGGGATTTATA    671

BSNT_01665___    672 TGTCACAGTGCTTTCAACATTTGTGACAAGCGGAATCTATATGTTCGGGA    721
                     |||.||.|||||.||.||||||.|.||||||||..|.||||||.||||.|
RBAM_009950__    672 TGTAACGGTGCTGTCGACATTTATCACAAGCGGCGTTTATATGCTCGGCA    721

BSNT_01665___    722 TATTCACGGCTTTGTTTCTGCTTGATGTGAAGCTTG----CGTTTGTATG    767
                     |.||.|||||..|||||.|||||||.||.|.|||.|    ||||||..||
RBAM_009950__    722 TTTTTACGGCGCTGTTTATGCTTGACGTCAGGCTGGCCGCCGTTTGCCTG    771

BSNT_01665___    768 TCTGGCAATTGTGCCGATTATCTGGCTGTGGTCTGTCATATACCGGAGAT    817
                      |||   |||.|.||||||.|...|.|.|||||.||..|.|||||.|.||
RBAM_009950__    772 -CTG---ATTATTCCGATTTTAATGATCTGGTCGGTTGTGTACCGCAAAT    817

BSNT_01665___    818 ----ATGCGTCATATTACAACCAAAAAATCCGCTCGATCAACAGTGACAT    863
                         ||.||||    |.|||||||||||||||.||.||.||||||.||||
RBAM_009950__    818 ACGCATCCGTC----TTCAACCAAAAAATCCGTTCCATTAACAGTAACAT    863

BSNT_01665___    864 TAACGCAAAAATGAATGAGTCAATTCAAGGCATGACCATTATTCAGGCTT    913
                     .||.||.||||||||.||.||.||||||||.|||.|.|||||||||||.|
RBAM_009950__    864 CAATGCGAAAATGAACGAATCCATTCAAGGAATGCCGATTATTCAGGCGT    913

BSNT_01665___    914 TCCGCCATCAAAAGGAAACAATGAGAGAATTTGAGGAATTAAATGAATCA    963
                     ||||||...||||||||||.||||..||||||||.|||||.||||||.|.
RBAM_009950__    914 TCCGCCGCGAAAAGGAAACGATGAAGGAATTTGAAGAATTGAATGAAGCT    963

BSNT_01665___    964 CATTTT---TATTTCCAA-AACAGGATGCTGAATTTAAACTCCTTAATGT   1009
                     ||||||   |||    || ||||..||||||...|||||.|||.|.||||
RBAM_009950__    964 CATTTTCGCTAT----AAGAACAAAATGCTGTCCTTAAATTCCCTCATGT   1009

BSNT_01665___   1010 CCCATAATTTGGTCAATGTCATCCGCAATCTTGCGTTCGTCTGTCTGATC   1059
                     ||||.|.|.|.||||||||..|.||||||||.|||||.|||.|.||||||
RBAM_009950__   1010 CCCACAGTCTTGTCAATGTGTTGCGCAATCTGGCGTTTGTCGGGCTGATC   1059

BSNT_01665___   1060 TGGCATTTTGGCGGTGCGAGCCTGAATGCGGCCGGGATTGTTTCTATCGG   1109
                     |||.||||.||.||.|||||.||||.|||||||||.||||||||.|||||
RBAM_009950__   1060 TGGTATTTCGGAGGCGCGAGTCTGAGTGCGGCCGGAATTGTTTCAATCGG   1109

BSNT_01665___   1110 TGTGCTGTACGCGTTTGTCGATTATTTGAACCGGTTATTTCAGCCGATCA   1159
                     |||..|.|||||||||||.||||||||.|||||.||.||.||||||.|.|
RBAM_009950__   1110 TGTTTTATACGCGTTTGTTGATTATTTAAACCGTTTGTTCCAGCCGGTTA   1159

BSNT_01665___   1160 CAGGCATCGTCAATCAGTTTTCAAAGCTGGAGCTTGCAAGGGTCTCCGCC   1209
                     |.||.||.|||||.||.|||||||||||.||..|.||..|.|||||.|||
RBAM_009950__   1160 CGGGGATTGTCAACCAATTTTCAAAGCTTGAATTGGCCCGTGTCTCTGCC   1209

BSNT_01665___   1210 GGGCGTGTTTTTGAACTGCTTGAAGAAAAGAATACGGAAGAACCGGGTGA   1259
                     |...|.||.||.||.||..|..|.||..||.|.|||||||||        
RBAM_009950__   1210 GCCAGAGTATTCGAGCTTTTACAGGAGGAGGAAACGGAAGAA--------   1251

BSNT_01665___   1260 ACCGGCGAAGGAGCGCGCGCTG------GGGCGG--------GTTGAATT   1295
                           |||||.||.|.|||.|      .|||||        ||.|||||
RBAM_009950__   1252 ------GAAGGCGCTCCCGCAGACAGAAAGGCGGAAGGGACAGTGGAATT   1295

BSNT_01665___   1296 TCGTGATGTGTCATTTGCGTATCAAGAAGGTGAAGAGGTATTAAAGCGTA   1345
                     .||.|||||.||.||||.|||||.|.|.||.||||||||..|.||.|..|
RBAM_009950__   1296 CCGCGATGTATCTTTTGGGTATCGAAAGGGAGAAGAGGTGCTGAAACACA   1345

BSNT_01665___   1346 TTTCCTTTACTGCGCAAAAAGGCGAAACCGTAGCGCTCGTCGGCCATACC   1395
                     |...||||||.||..|||||||.||.||.||.||.||||||||||||||.
RBAM_009950__   1346 TCAGCTTTACAGCTGAAAAAGGAGAGACGGTCGCCCTCGTCGGCCATACG   1395

BSNT_01665___   1396 GGATCAGGAAAAAGCTCGATTTTGAATCTGCTGTTTCGTTTTTATGATGC   1445
                     ||.||.||.||||||||.|||||||||||.|||||.||||||||||||||
RBAM_009950__   1396 GGGTCCGGCAAAAGCTCCATTTTGAATCTTCTGTTCCGTTTTTATGATGC   1445

BSNT_01665___   1446 GCAAAAAGGTGATGTCTTAATTGATGGA----AAAAGCATTTACAACATG   1491
                     .||||||||.|||.|    |.||.||||    ||||||||.|||..||||
RBAM_009950__   1446 CCAAAAAGGAGATAT----ACTGCTGGACGATAAAAGCATATACGGCATG   1491

BSNT_01665___   1492 TCAAGACAGGAACTCAGATCCCATATGGGCATTGTGCTTCAGGACCCGTA   1541
                     ||.||.|||||.||.||.||.|||||||||||||||||.||.||||||||
RBAM_009950__   1492 TCGAGGCAGGAGCTGAGGTCGCATATGGGCATTGTGCTGCAAGACCCGTA   1541

BSNT_01665___   1542 -CTTATTCTCGGGTACAATCGGATCTAACGTAAGTCTGGATGA----CGA   1586
                      ||| ||||||||.||.|||||.||.||.||.|..||.|||||    ||.
RBAM_009950__   1542 TCTT-TTCTCGGGCACGATCGGCTCCAATGTGACACTCGATGATCAGCGT   1590

BSNT_01665___   1587 A---------AGAATGACTGAAGAAGAAATAAAAAATGCACTGCGGCAAG   1627
                     |         ||.| |.|.||||||            ||.||.||.||||
RBAM_009950__   1591 ATTTCTTTGGAGCA-GGCGGAAGAA------------GCGCTTCGCCAAG   1627

BSNT_01665___   1628 TCGGTGCTG--AGCCTCTTCTTAAGAAGCTTCCGAAGGGCATTAATGAGC   1675
                     ||||.||.|  ||  ||||||..|....||.|||||||||||.|..||||
RBAM_009950__   1628 TCGGCGCCGCAAG--TCTTCTGCAATCCCTGCCGAAGGGCATCAGAGAGC   1675

BSNT_01665___   1676 CCGTGATTGAAAAAGGCAGCACGCTATCCTCTGGAGAGCGGCAGTTAATT   1725
                     ||||.|..|||||||||.||||.||.|||||.||..||||.|||.|.|||
RBAM_009950__   1676 CCGTTACCGAAAAAGGCGGCACACTGTCCTCAGGCCAGCGTCAGCTGATT   1725

BSNT_01665___   1726 TCTTTCGCTAGAGCTTTGGCGTTTGATCCCGCGATCTTGATTTTAGATGA   1775
                     |||||.||.|||||..|.|.|||.|||||.||.||.||.|||||.|||||
RBAM_009950__   1726 TCTTTTGCAAGAGCGCTTGTGTTCGATCCGGCCATTTTAATTTTGGATGA   1775

BSNT_01665___   1776 GGCAACGGCGCATATTGATACAGAGACAGAGGCCGTGATCCAGAAGGCGC   1825
                     |||.||||||||.|||||.||.||.|||||.||.||.||.||.||.||||
RBAM_009950__   1776 GGCGACGGCGCACATTGACACCGAAACAGAAGCAGTCATTCAAAAAGCGC   1825

BSNT_01665___   1826 TTGATGTCGTCAAACAAGGACGCACCACCTTCGTCATCGCTCACCGGCTT   1875
                     |..|.|||||..||.||||.|||||.||.||..|.|||||.||.||||||
RBAM_009950__   1826 TGCAAGTCGTTCAAGAAGGGCGCACGACATTTATTATCGCCCATCGGCTT   1875

BSNT_01665___   1876 TCAACAATCAGAAATGCTGATCAGATTTTGGTTCTTGATAAAGGAGAAAT   1925
                     ||.||.||||||.|.||.||.||||||.|.||.||.||.||.||....||
RBAM_009950__   1876 TCCACGATCAGACACGCAGACCAGATTCTCGTGCTGGAAAAGGGCCGCAT   1925

BSNT_01665___   1926 TGTTGAGAGAGGGAA-CCACGAGGAATTGATGGCATTAGAAGGCCGATAT   1974
                     |.|||| |.|||||| |||.||.|||||.|||||...|.|.||.|..||.
RBAM_009950__   1926 TATTGA-AAAGGGAAGCCATGACGAATTAATGGCGCAAAAGGGGCAGTAC   1974

BSNT_01665___   1975 TATCAAATGTATGAACTGCA-AAAGGGACAGAAACATTCCATTGCATAA   2022
                     .|.||||||||||||.|||| |||||.||.|..| |.|||...|..|||
RBAM_009950__   1975 CACCAAATGTATGAATTGCAGAAAGGAACGGCGA-AGTCCGCGGTGTAA   2022


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