Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01674 and RBAM_010000

See Amino acid alignment / Visit BSNT_01674 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_01674___yheD.1.9828.seq
#    -bsequence dna-align/RBAM_010000___yheD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01674___yheD-RBAM_010000___yheD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01674___yheD-RBAM_010000___yheD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01674___yheD
# 2: RBAM_010000___yheD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1439
# Identity:     953/1439 (66.2%)
# Similarity:   953/1439 (66.2%)
# Gaps:         157/1439 (10.9%)
# Score: 2943.0
# 
#
#=======================================

BSNT_01674___      1 GTGAATCCTAAACGG-TTTTTGATCGGCATAGACAAAACCAGTGAAAACA     49
                     |||||||.||||.|| |..||| |||||||.||.||||..||..||||.|
RBAM_010000__      1 GTGAATCATAAAGGGATGATTG-TCGGCATCGATAAAAAAAGCAAAAATA     49

BSNT_01674___     50 CCCTGTTTCTGCCCTCTTCGCTGAAGCGAGACGGACTTTTGCAT--GCCG     97
                     |.||||||||.|||||.||..||||.||.||.||.|||||  ||  ||.|
RBAM_010000__     50 CGCTGTTTCTCCCCTCCTCCATGAAACGGGAAGGGCTTTT--ATCCGCTG     97

BSNT_01674___     98 CATTCGGAACGAAGGTTGTCAGATGCCACGTTGC--TTACAGACGGCAT-    144
                     |.|||||.||.||||||||||.|||||..||.||  ||.|..|    || 
RBAM_010000__     98 CCTTCGGGACCAAGGTTGTCAAATGCCGTGTAGCCTTTTCTCA----ATC    143

BSNT_01674___    145 -CTGGAACAAACCGTGCTACTCTCTGAAAATCTGTTTCATGAGCTTTTGC    193
                      ||.|||.|||.||.|||.||.||||||.||.|||||.|.|||||.|||.
RBAM_010000__    144 ACTTGAAAAAAGCGCGCTCCTTTCTGAAGATTTGTTTGAGGAGCTGTTGA    193

BSNT_01674___    194 TCCCCCACCGAAGCAGGGCTGATATACTGATTCATGATCATACAGTGCAT    243
                     |.||.||...||||.|||||||..|.||.||.||.|..||.||.|||||.
RBAM_010000__    194 TACCGCATAAAAGCCGGGCTGACTTTCTCATACACGGCCAGACGGTGCAC    243

BSNT_01674___    244 ATCGGGCCGTTAGTCGGCATCTTTACGGCAGGGTTTACTGTATCTCTTGA    293
                     |||||.|||.|..|||||.|.||.||.||.|||||.||...|||.|    
RBAM_010000__    244 ATCGGACCGCTGATCGGCGTTTTCACAGCCGGGTTCACATCATCGC----    289

BSNT_01674___    294 ACGT----CCATTTAAG-GATCGTTCCCTCTTTTTTTCTAAACTTGTCAC    338
                      |||    ||..||||| ||.|||.|...|||.|||||.||..|..||.|
RBAM_010000__    290 -CGTCCCGCCCGTTAAGAGACCGTACAGCCTTCTTTTCCAAGATGCTCTC    338

BSNT_01674___    339 GTTACACGAGCAAGC---CGGAGGCTACTGCTTCGTTTTTGGCGCGCACC    385
                     ..|.||.||.||.||   ||||   ||.||.||||||||.||.||.||.|
RBAM_010000__    339 TCTTCATGAACAGGCGAACGGA---TATTGTTTCGTTTTCGGGGCCCATC    385

BSNT_01674___    386 AAATCAATTGGGAGGAAGGCACGATTGAAGGCCTCCTTTACAGGGAAAAC    435
                     |.|||||.|||||.||||||||..|..|||..||..||||.|..||||||
RBAM_010000__    386 AGATCAACTGGGAAGAAGGCACCGTCCAAGCGCTGATTTATAAAGAAAAC    435

BSNT_01674___    436 GGCTGGGAGAAAAAAA-------TCGTTCCATTGCCGAACGTCGTTTATG    478
                     .|||||       |||       .|||.||..|.|||||.|||||.||||
RBAM_010000__    436 AGCTGG-------AAACGGACGGCCGTCCCGCTTCCGAATGTCGTATATG    478

BSNT_01674___    479 ACCGTTTGCCGAACCGAAAAATTGAAGATTCACTT---CTCTTGCAACAT    525
                     ||.|..|.||||.||||||||..|||||   |.||   ||.||.||.||.
RBAM_010000__    479 ACAGGCTCCCGAGCCGAAAAACGGAAGA---AGTTCCGCTTTTACAGCAG    525

BSNT_01674___    526 ACAAAAAAGAGGCTGATCGATGAATATCAGATCCCATGGTTTAAT----A    571
                     ||||||.|.||||||||..||||.||||||||.||||||||||||    |
RBAM_010000__    526 ACAAAACAAAGGCTGATGAATGACTATCAGATTCCATGGTTTAATCCGCA    575

BSNT_01674___    572 AAACGTTTTTCAATAAATGGAACGTTCATCAATTGCTCGAAAAAGATCCG    621
                     |    ||.||.|||||||||.||.|||||.|..|.||.||||||      
RBAM_010000__    576 A----TTCTTTAATAAATGGGACATTCATAAGCTTCTGGAAAAA------    615

BSNT_01674___    622 AGAACGG---CACC-CT----TTTTGCCTAGATCCGAGCTGACA-CCGTC    662
                       |||.|   |||| ||    ||.||||.|.|||.|..||| || |||..
RBAM_010000__    616 --AACAGTCTCACCGCTTCACTTCTGCCAAAATCTGTCCTG-CACCCGAA    662

BSNT_01674___    663 TG-TGGAGCTGATTGATGAGCTCTGTGGCGCATACAAAAAAGTCTATATC    711
                     || .|.||| |.|.||...|.|.||..||.|.|...|.|..|||||||||
RBAM_010000__    663 TGCAGAAGC-GTTAGAAACGTTATGCAGCACGTTTGACACCGTCTATATC    711

BSNT_01674___    712 AAACCGGCTAATGGAGCACTCGGCACCGGCATTTATCAGCTGAAAAGAAC    761
                     |||||.||..|.||.||||||||.||.||.|||||..||.||.|||.|||
RBAM_010000__    712 AAACCTGCAGACGGCGCACTCGGAACGGGGATTTACAAGGTGGAAAAAAC    761

BSNT_01674___    762 AGATGGCGGCCTGACGGTAAAGCATACGAATGACGCCAAAAC-------A    804
                     |||||.||||.|..|.||.||.||.||||||||.|..|||||       |
RBAM_010000__    762 AGATGCCGGCTTATCTGTCAAACACACGAATGAGGAAAAAACGGTGGTGA    811

BSNT_01674___    805 TTTACTTCGATTGATTATTCCGATGCCGCCTCATTCCTTGCAGAATTTCA    854
                            ||...||.|||||.|||||.||.||.|||.|..||..||||.|
RBAM_010000__    812 -------CGGCAGAGTATTCAGATGCGGCATCCTTCATGACATCATTTAA    854

BSNT_01674___    855 --AAAACAGCAGAACCCGTCCGACTTTCTCATTCAGCAAGGTGTTGATCT    902
                       ||||||  |..|||||||||..|||.|.|||||||||||..||||.||
RBAM_010000__    855 AGAAAACA--ATGACCCGTCCGCATTTTTAATTCAGCAAGGCATTGACCT    902

BSNT_01674___    903 CATC-----GAATTTCAAGGCAAACCAGCG-------GATTTCCGTGTCC    940
                     .|||     |.||     ||       |||       ||||||.|.||.|
RBAM_010000__    903 GATCCGGCTGGAT-----GG-------GCGCCCCGTCGATTTCAGGGTGC    940

BSNT_01674___    941 ATACCAATAAAAAC----AGAAAAGGAAAATGGACAGTGACAGCAATCGC    986
                     |.||.|||||||||    ||    ||.||||||||||||||.||.||.||
RBAM_010000__    941 ACACGAATAAAAACGCCGAG----GGGAAATGGACAGTGACGGCCATTGC    986

BSNT_01674___    987 CGTAAAAATTTCCGGAAAGAACAGCATTACAACACATCTTTCTAACGGCG   1036
                     .|.||||||||||||..|.||||||||.||.||.|||||..|.|.|||||
RBAM_010000__    987 GGCAAAAATTTCCGGTGAAAACAGCATCACGACGCATCTGGCAACCGGCG   1036

BSNT_01674___   1037 GCACTGTAAAGACACTTGCGGAAGTGTACGATGATCC-CGCTGAAAGAGT   1085
                     |....||.|.|||..|.||.|||.|.||||..||||| ||| ||.|||||
RBAM_010000__   1037 GAGAAGTCAGGACGTTAGCTGAATTATACGGCGATCCGCGC-GAGAGAGT   1085

BSNT_01674___   1086 --------TGAGGTCATTAAAAAGCTTTCTGCAGCGGCACTGACGGCAAG   1127
                             ||.||        ||.|||||...|||.||..||.|||..||
RBAM_010000__   1086 CGGCATGATGCGG--------AAACTTTCAAAAGCCGCCTTGGCGGTCAG   1127

BSNT_01674___   1128 CCATGTCCTTCATGATCATATCGAGGGGTTTATCGGGGAGATCGGTTTCG   1177
                     ||..||..|..||||.||.||.||.||.||||||||.||.||||||||.|
RBAM_010000__   1128 CCGCGTGTTAAATGAGCACATTGAAGGTTTTATCGGCGAAATCGGTTTTG   1177

BSNT_01674___   1178 ATTTTGGCATTGATCAGAACGGTAAAGTATGGATGTTTGAAGCGAATTCG   1227
                     |..|.|||.|.|||||....||.|||||.||||||||||||||.|||||.
RBAM_010000__   1178 ACCTCGGCGTCGATCATTCAGGGAAAGTTTGGATGTTTGAAGCCAATTCC   1227

BSNT_01674___   1228 CGCCCGGGCCGAAGCATTTTTTCTCATCCAAATTTGCATCAT--GTTGAT   1275
                     |||||.||.||.|||||||||||.|||||.||..||.|  ||  ||.|||
RBAM_010000__   1228 CGCCCCGGGCGCAGCATTTTTTCCCATCCGAAGCTGAA--ATCGGTCGAT   1275

BSNT_01674___   1276 TCTCTTACAAAACGAAGAAGCTTTGAATACGCGTCATATTTATCTGAGAA   1325
                     |..||.||||||||.||||..||||||||||||||.||||||||  ||||
RBAM_010000__   1276 TACCTGACAAAACGGAGAAATTTTGAATACGCGTCGTATTTATC--AGAA   1323

BSNT_01674___   1326 --GGCAATCATATCTCCTGAAGCATTGTGGCCTTCGTAA   1362
                       |.|.||||...|.||.|||..|.|.||||   .||.|
RBAM_010000__   1324 CGGTCCATCACCGCCCCGGAAAAACTTTGGC---GGTGA   1359


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