Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01676 and RBAM_010020

See Amino acid alignment / Visit BSNT_01676 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_01676___yheB.1.9828.seq
#    -bsequence dna-align/RBAM_010020___yheB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01676___yheB-RBAM_010020___yheB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01676___yheB-RBAM_010020___yheB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01676___yheB
# 2: RBAM_010020___yheB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1201
# Identity:     819/1201 (68.2%)
# Similarity:   819/1201 (68.2%)
# Gaps:         134/1201 (11.2%)
# Score: 2684.5
# 
#
#=======================================

BSNT_01676___      1 ATGGGTATTGCAGGAACCTTTATTTTTATGATCGTGATCGGCGCTGCCAT     50
                     |||||.||.||||||||.|||.|.||||||||.||||||||.||.||.||
RBAM_010020__      1 ATGGGCATAGCAGGAACGTTTCTATTTATGATTGTGATCGGAGCCGCGAT     50

BSNT_01676___     51 TGGAGCGGTGACCAATCATTTAGCAATTCAAATGCTGTTTAGGCCGTATA    100
                     .||.||||||||.||||||.|.||.|||||.|||.|.|||.|.|||||..
RBAM_010020__     51 CGGCGCGGTGACGAATCATCTTGCCATTCAGATGTTATTTCGTCCGTACC    100

BSNT_01676___    101 AAGCGTACTATTTGTTTGGGAAGCGAGTTCCTTTTACGCCCGGGCTGATT    150
                     ...||||.||..||||.||.||.||.|||||.||||||||.||||||||.
RBAM_010020__    101 GGCCGTATTACCTGTTCGGAAAACGGGTTCCGTTTACGCCGGGGCTGATC    150

BSNT_01676___    151 CCAAGACGGCGAGATGAACTTGCAAAACAAATGGGACTGATGGTAGTC-A    199
                     ||.|.|.||||.||||||.|.||||||||||||||.||.||||| |.| |
RBAM_010020__    151 CCGAAAAGGCGGGATGAATTGGCAAAACAAATGGGGCTCATGGT-GACGA    199

BSNT_01676___    200 ATCATCTCTTAACCCCTGAAGGCATTAAAAAGCGGCTCGTCTCTGATGCA    249
                     |.||.||.||||||||.|||||.||.|||||||||||..|.||.|||.|.
RBAM_010020__    200 ACCACCTTTTAACCCCGGAAGGAATAAAAAAGCGGCTTTTATCAGATACC    249

BSNT_01676___    250 GCCAAAACGCAGGCTCTTCGAGTGGGGGAACAGCTGATT----CAAAAGC    295
                     |..||||..|||||.||||...|.|..|||||    |||    |||||..
RBAM_010020__    250 GTTAAAAACCAGGCGCTTCTTTTCGCCGAACA----ATTCACACAAAAAA    295

BSNT_01676___    296 TGTCACTTTCTGAAGTGACAGTAAAAGAAGC----GCTTGAAAAAGCCG-    340
                     ||.|...|||.||..||||.||..|.|||||    |||       |||| 
RBAM_010020__    296 TGGCCGCTTCCGAGATGACGGTGCACGAAGCTTTGGCT-------GCCGC    338

BSNT_01676___    341 -GG----ATGAAGCGCCCCGAAAAAGCTGCTGATGCATGGATCAGCAGCT    385
                      ||    .||||.| |.|.|.|||||  .|.|||||.|||||...|.|.|
RBAM_010020__    339 AGGCATCCTGAATC-CGCAGGAAAAG--ACGGATGCCTGGATTGACCGTT    385

BSNT_01676___    386 GGACCGATGATAAGCT----GAATGAGCTTTTCCGCCAATACGGGCACCA    431
                     ..||||||||.|||||    |||    ||.|.|||..||||.|.|||||.
RBAM_010020__    386 TTACCGATGAAAAGCTTTCGGAA----CTGTACCGGAAATATGAGCACCG    431

BSNT_01676___    432 ATCGTTAAAAGAGCTGG-TGCCT-ATAGAGGTGCAGGAAAAGCTTGAAGA    479
                     ..|..||||||| |||| |.||| || |||.|.|||||||||||.||.||
RBAM_010020__    432 CGCCATAAAAGA-CTGGCTTCCTGAT-GAGCTTCAGGAAAAGCTGGATGA    479

BSNT_01676___    480 AAAGATTCCGATGATTTCAGGATATATATTGTCA--CGGAG---TGTCCG    524
                     |||..|.|||.||....|| ||| ||||||.|.|  |||||   ||   .
RBAM_010020__    480 AAAAGTCCCGTTGGCCGCA-GAT-TATATTCTGAAGCGGAGCACTG---A    524

BSNT_01676___    525 TTATTTTGAAAGTGATGAAGGAAAAATCCGTCTTGGCAATATGATTGATG    574
                     |||||||||.||.||.|||||.|||..|.|.||.||.|||||||||||.|
RBAM_010020__    525 TTATTTTGAGAGCGAAGAAGGGAAAGACAGGCTCGGAAATATGATTGACG    574

BSNT_01676___    575 ACTTTTTAAAAGAGCGCGGCATGCTTGGAAGCATGGTGCAAATGTTTCTT    624
                     |||||||.||....||.||.|||||.||.|||||||||||.|||||.||.
RBAM_010020__    575 ACTTTTTGAATTCCCGGGGGATGCTCGGCAGCATGGTGCAGATGTTCCTC    624

BSNT_01676___    625 GGCAATTCAAGCCTTGCGGATCGCGTGCTGCCGGAGCTGCTGAAATTCTT    674
                     ||||||||||||.|.||.||.||.||||||||.||||||.|.||.||.||
RBAM_010020__    625 GGCAATTCAAGCTTGGCAGACCGTGTGCTGCCTGAGCTGTTAAAGTTTTT    674

BSNT_01676___    675 GCGCAATGAGGAAACAAATAAATTGCTTTCTGATC-----TCTTAAAAAA    719
                     |||||||||||||||.||.||..|.||..||||||     |||.||    
RBAM_010020__    675 GCGCAATGAGGAAACGAAAAAGCTTCTGGCTGATCTGCTTTCTCAA----    720

BSNT_01676___    720 CGAATGGGGCAAGCTGAGGGAGTATACGTTTAATGAAGCAGATGAAAAAT    769
                      ||||||||||||||.|.....|||||..||.||||.||.||||||||.|
RBAM_010020__    721 -GAATGGGGCAAGCTCAAATCTTATACACTTTATGAGGCCGATGAAAAGT    769

BSNT_01676___    770 GGAATGCAAAGGCGCTCATTTTCAGTTTGAAACGAAGAGTGCT---GCAA    816
                     |||||||.||.|..||..|.|||||..|||||  |||.|.|||   || .
RBAM_010020__    770 GGAATGCGAAAGATCTGCTGTTCAGCATGAAA--AAGCGGGCTTTGGC-C    816

BSNT_01676___    817 GCATTTTCGACTGC-CCCTTTCTTCGACAATACGATTGGCACGCTTAC--    863
                     |||.||...||.|| |||||| ||||  |||.|   .|||.||.|.||  
RBAM_010020__    817 GCACTTCAAACCGCGCCCTTT-TTCG--AATGC---CGGCTCGGTGACAT    860

BSNT_01676___    864 ---CGTCCGCTATGAATCTGAGCTGAC---------CCAGCAAATGCTGC    901
                        |..|||.||||||...|||.|.||         |..||..|.|||||
RBAM_010020__    861 CATCTCCCGTTATGAAGGGGAGATTACGGGAACGTACGCGCCGAAGCTGC    910

BSNT_01676___    902 ------CGGCACT-----GTTAGACAAATTGC-------TTGAAGGGATT    933
                           |||||||     ||       |||||       |||.|||    
RBAM_010020__    911 TTGATGCGGCACTCGGCAGT-------ATTGCCGCTCATTTGGAGG----    949

BSNT_01676___    934 TCGTCCAACCTTGAAAGTGTCTTAAAACGGTTGCGTCTTGAGGAAATCGT    983
                                     .|||..|.||||||.||||||||||||||.|.||
RBAM_010020__    950 ----------------ATGTGCTGAAACGGCTGCGTCTTGAGGAAGTGGT    983

BSNT_01676___    984 CAAGGAGCAGGTGGATCAGTTCCCGGTGGAGCGTCTTGAAGAAATGGTGC   1033
                     |||.||||||||.||||||||.||.||.||.||.||.||.||||||||||
RBAM_010020__    984 CAAAGAGCAGGTTGATCAGTTTCCCGTTGAACGGCTGGAGGAAATGGTGC   1033

BSNT_01676___   1034 TGTCCATTTCAAAAAAAGAATTTAAAATGATTACCTATTTGGGGGGCCTT   1083
                     ||||.|||||.||.|.|||||||||.|||||.||.|||||.||.||.||.
RBAM_010020__   1034 TGTCGATTTCCAAGAGAGAATTTAAGATGATAACGTATTTAGGCGGTCTG   1083

BSNT_01676___   1084 CTCGGCGGAATTATAGGCGCGATTCAAGCATTGTTTGTCATCCTTTTTTA   1133
                     ||||||||.||.||.||.||.|||||.||.|||||||||||.|||||.||
RBAM_010020__   1084 CTCGGCGGGATAATCGGAGCAATTCAGGCTTTGTTTGTCATTCTTTTCTA   1133

BSNT_01676___   1134 A   1134
                     |
RBAM_010020__   1134 A   1134


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