Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01681 and RBAM_010060

See Amino acid alignment / Visit BSNT_01681 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:21
# Commandline: needle
#    -asequence dna-align/BSNT_01681___yhaX.1.9828.seq
#    -bsequence dna-align/RBAM_010060___yhaX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01681___yhaX-RBAM_010060___yhaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01681___yhaX-RBAM_010060___yhaX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01681___yhaX
# 2: RBAM_010060___yhaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity:     680/875 (77.7%)
# Similarity:   680/875 (77.7%)
# Gaps:          16/875 ( 1.8%)
# Score: 2619.0
# 
#
#=======================================

BSNT_01681___      1 GTGTCAAAACAATTGCTTGCCTTAAATATAGATGGAGCGCTGCTTCGGTC     50
                     ||||||||||||.||||.||.|||||||||||.||||||||.|||||.||
RBAM_010060__      1 GTGTCAAAACAAATGCTGGCGTTAAATATAGACGGAGCGCTTCTTCGCTC     50

BSNT_01681___     51 GAACGGGAAGATTCATCAGGCAACGAAAGACGCGATTGAATATGTAAAGA    100
                     .|||||.||..||||||||.|.||.||.||.||.||.|||||.||.||||
RBAM_010060__     51 CAACGGCAAACTTCATCAGACGACAAAGGATGCCATCGAATACGTCAAGA    100

BSNT_01681___    101 AAAAAGGGATTTACGTCACACTTGTGACCAACCGTCATTTTCGCTCAGCA    150
                     |||||||.||||||||||||||.||.||.|||||.|||||||||||.||.
RBAM_010060__    101 AAAAAGGAATTTACGTCACACTGGTCACAAACCGCCATTTTCGCTCCGCT    150

BSNT_01681___    151 CAGAAAATAGCGAAATCGCTAAAGCTTGATGCCAAGCTGATCACCCATAG    200
                     ||.|||.|.||||||....|||||||..||||.||..||||.|||||.||
RBAM_010060__    151 CAAAAAGTGGCGAAAATATTAAAGCTGAATGCGAAATTGATTACCCACAG    200

BSNT_01681___    201 CGGGGCATATATCGCTGAGAAAATTGACGCCCCGTTTTTTGAAAAAAGAA    250
                     |||.|||||.||..||||.|||||.||.|..||||||||||||||.|.||
RBAM_010060__    201 CGGCGCATACATTTCTGAAAAAATAGATGAGCCGTTTTTTGAAAAGAAAA    250

BSNT_01681___    251 TTTCTGATGATCATACCTTTAACATTGTTCAAGTGCTGGAGAGCTATCAA    300
                     |.||.||.|||||.||.|||||.||||||||.||||||||.|||||||.|
RBAM_010060__    251 TATCAGAAGATCACACGTTTAATATTGTTCAGGTGCTGGAAAGCTATCCA    300

BSNT_01681___    301 TGTAATATTCGGCTTCTTCACGAAAAGTATTCCATCGGAAACAAGAAAAA    350
                     ||.|||||.|||||||||||||||||.|||||.||||||||||||||.||
RBAM_010060__    301 TGCAATATCCGGCTTCTTCACGAAAAATATTCGATCGGAAACAAGAAGAA    350

BSNT_01681___    351 GGTGAATTCGAATTTATTGGGGAAAGCACTCATTCATCCGTCTGACCCGA    400
                     .|||||.||.|||.|..|.||||||.|..|.|||||||||||||||||||
RBAM_010060__    351 AGTGAACTCCAATCTGGTCGGGAAAACGATGATTCATCCGTCTGACCCGA    400

BSNT_01681___    401 TCTTCTATCCAGTCCAGTTCGTTGAATCATTAAGCGATCTCCTCATGGAT    450
                     |.||.|||||.||.|||||.||.|||||||||||.||.||.|||.|.|||
RBAM_010060__    401 TTTTTTATCCGGTGCAGTTTGTCGAATCATTAAGTGACCTGCTCCTTGAT    450

BSNT_01681___    451 GAGCCGGTGAGTGCACCCGTCATCGAGGTGTACACGGAGCACGACATTCA    500
                     ||||||||....||.||||||||.||.|||.|..|.||..|.|.|.|.||
RBAM_010060__    451 GAGCCGGTTTCAGCGCCCGTCATTGAAGTGCATGCCGAAGATGGCCTGCA    500

BSNT_01681___    501 GCATGACATTACAGAAACGATTACAAAAGCCTTCCCTGCAGTGGATGTGA    550
                     |..|||.||.||.||.|||||.|..|||||.|||||.||.||.|||||||
RBAM_010060__    501 GGCTGATATAACGGATACGATAATGAAAGCATTCCCGGCCGTCGATGTGA    550

BSNT_01681___    551 TTCGCGTAAACGATGAGAAGCTGAATATCGTCCCGAAAGGTGTCTC-GAA    599
                     |.|||||.||||..||.||.|||||.|||||.||.|||||.||.|| .||
RBAM_010060__    551 TCCGCGTCAACGGAGAAAAACTGAACATCGTGCCTAAAGGGGTTTCAAAA    600

BSNT_01681___    600 GGAAGCGGGTT-----TGGCCCTCGTCGCTTCAGAGCTGGGCCTGAGTAT    644
                     |.||||||..|     |||   |||.||||   ||.||.||.||....||
RBAM_010060__    601 GAAAGCGGACTTTCGATGG---TCGCCGCT---GAACTCGGGCTTTCAAT    644

BSNT_01681___    645 GGATGATGTCGTGGCCATTGGGCATCAGTATGACGATCTGCCGATGATCG    694
                     |||.||.||.||.||.||.||.||||||.|.||.||||||||||||||||
RBAM_010060__    645 GGAAGAGGTTGTAGCTATCGGCCATCAGGAAGATGATCTGCCGATGATCG    694

BSNT_01681___    695 AACTTGCCGGTCTTGGGGTAGCGATGGGGAATGCCGTTC--CGGAAATTA    742
                     |.||.||||||||.||.||.|||||||||||||||  ||  ..|||.|.|
RBAM_010060__    695 AGCTGGCCGGTCTCGGCGTCGCGATGGGGAATGCC--TCAAATGAATTAA    742

BSNT_01681___    743 AGAGAAAGGCAGATTGGGTTACAAGGTCCAATGACGAGCAAGGTGTCGCT    792
                     |.|||||.||.||.|||||.||||||||.|||||.||.|||||.|||||.
RBAM_010060__    743 AAAGAAAAGCGGACTGGGTGACAAGGTCAAATGATGAACAAGGAGTCGCC    792

BSNT_01681___    793 TATATGATGAAGGAATATTTCCGAATGCAGCAGCGAAAAGGATTTCTTGA    842
                     ||||||||.||||||||||||||.||||||||.||.|||||.|||||.||
RBAM_010060__    793 TATATGATTAAGGAATATTTCCGCATGCAGCACCGCAAAGGCTTTCTCGA    842

BSNT_01681___    843 TAAGTTCCACATGAAACGTGTGTAA    867
                     |||||||||.||||||||...||||
RBAM_010060__    843 TAAGTTCCATATGAAACGGCCGTAA    867


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