Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01683 and RBAM_010090

See Amino acid alignment / Visit BSNT_01683 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01683___yhaU.1.9828.seq
#    -bsequence dna-align/RBAM_010090___yhaU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01683___yhaU-RBAM_010090___yhaU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01683___yhaU-RBAM_010090___yhaU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01683___yhaU
# 2: RBAM_010090___yhaU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1224
# Identity:     947/1224 (77.4%)
# Similarity:   947/1224 (77.4%)
# Gaps:          15/1224 ( 1.2%)
# Score: 3603.5
# 
#
#=======================================

BSNT_01683___      1 ATGGACCATCTTGTATTTGAAGTCGGAACTGCACTTGTCCTTGTGGCAAT     50
                     |||||||||||.||||||||||||||.||.||..|.||.||||||||.||
RBAM_010090__      1 ATGGACCATCTCGTATTTGAAGTCGGTACGGCGTTAGTTCTTGTGGCTAT     50

BSNT_01683___     51 CGCCAGTGTGATCGCCAATAAAATTAAATTTTCGATTATTCCGTTTCTGA    100
                     .||.|||||.||||||||||||||||||||.|||||.||.||.||.||||
RBAM_010090__     51 TGCGAGTGTCATCGCCAATAAAATTAAATTCTCGATCATCCCCTTCCTGA    100

BSNT_01683___    101 TTGTGCTGGGAATGCTTGTTGGACCGCACGCGCCTAAAATGGGGATTATT    150
                     |..|..|.||||||||.||.||.|||||||||||..||..|||.||.|||
RBAM_010090__    101 TCATTTTAGGAATGCTCGTCGGGCCGCACGCGCCCCAAGCGGGCATCATT    150

BSNT_01683___    151 GATCTAACATTTATTCAAAGCAGTGAAATCATCGAGTTTTTCGGGCGAAT    200
                     ||.||.||.|||||..|||||.|.|||.|.||.||.||||||||.||.||
RBAM_010090__    151 GACCTGACGTTTATCGAAAGCCGGGAAGTGATTGAATTTTTCGGACGGAT    200

BSNT_01683___    201 GGGCGTACTGTTCCTCCTCTTCTATCTCGGACTCGAATTCTCTGTCGGGA    250
                     ||||||.||||||||||||||.||.|||||.||.||||||||.|||||.|
RBAM_010090__    201 GGGCGTCCTGTTCCTCCTCTTTTACCTCGGGCTTGAATTCTCGGTCGGAA    250

BSNT_01683___    251 AGTTAATCAAATCAGGAAAATCAATCGCGGTCGGCGGGACGATTTATATT    300
                     |.|||.|||||||.|||...||.|||||.|.||||||.||||||||||||
RBAM_010090__    251 AATTAGTCAAATCCGGACGTTCTATCGCCGCCGGCGGAACGATTTATATT    300

BSNT_01683___    301 TTGATTAACTTCAGCCTCGGACTGCTTTACGGGTTTATCACCGGATTTTC    350
                     .|||||||.|||||..|.||.|||.|.|||||.||||||||.||.|||||
RBAM_010090__    301 CTGATTAATTTCAGTTTAGGGCTGATCTACGGCTTTATCACAGGCTTTTC    350

BSNT_01683___    351 CTTTCTGGAAGTCCTCATCCTCGCAGGCGTCATCACAATCTCGTCAAGTG    400
                     ||||.|||||||.||..|..|.||.|||||||||||.||.||.|||||.|
RBAM_010090__    351 CTTTTTGGAAGTGCTTGTATTGGCGGGCGTCATCACGATATCATCAAGCG    400

BSNT_01683___    401 CGATTGTCGCAAAAGTGCTCGTTGATTTAAAAAGAACCGCCAATCCGGAA    450
                     |.|||||||||||.|||||.||.||.|||||..|.||.||||||||||||
RBAM_010090__    401 CCATTGTCGCAAAGGTGCTTGTCGACTTAAAGCGCACGGCCAATCCGGAA    450

BSNT_01683___    451 ACCGAATTGATTCTCGGCATCATCATGTTTGAAGATATTTTCCTTGCCGT    500
                     ||.||..||||||||||||||||.||||||||.|||||.||.||.||.||
RBAM_010090__    451 ACGGAGCTGATTCTCGGCATCATTATGTTTGAGGATATCTTTCTGGCGGT    500

BSNT_01683___    501 ATATCTGTCCGTTGTTTCCGGGCTTGTGCTAGGTGATGCGACATCCGTAG    550
                     .||..|||||||.||||||||||||||.||.||.||.|||||.||.||.|
RBAM_010090__    501 TTACTTGTCCGTCGTTTCCGGGCTTGTTCTGGGAGACGCGACGTCTGTCG    550

BSNT_01683___    551 GGAGTGCACTCTTGTCCATTTTGATCGCCTTCGGTTATATGCTGCTGTTT    600
                     |..|.||.||..||||.||..|||||||.|||||.|||||||||||||||
RBAM_010090__    551 GAGGCGCGCTGATGTCAATCGTGATCGCTTTCGGATATATGCTGCTGTTT    600

BSNT_01683___    601 TTTATCGCAGCAAGAAAACTCCCGCCGCTGTTGAACAAACTGTTGGACAT    650
                     ||.||.||.||..|||||.|.|||||.|||.|||||||.|||.|.||.||
RBAM_010090__    601 TTCATTGCCGCTCGAAAATTGCCGCCTCTGCTGAACAAGCTGCTTGATAT    650

BSNT_01683___    651 TCGCTCAAACGAAGTGTTTATTATCGTCATTTTCGCAGCACTCTTTTTTA    700
                     .||.||||||||.||.|||...||||||||||||||.||.||||||||.|
RBAM_010090__    651 CCGTTCAAACGAGGTATTTGCCATCGTCATTTTCGCCGCGCTCTTTTTCA    700

BSNT_01683___    701 TCGCCGGGTTTTCAGAGACGATTCATGTAGCAGAAGCAATCGGCGCGCTG    750
                     |.|||||.|||||.||.|||||||||||.||.|||||.|||||||||||.
RBAM_010090__    701 TTGCCGGCTTTTCCGAAACGATTCATGTCGCTGAAGCGATCGGCGCGCTC    750

BSNT_01683___    751 CTGCTCGGTTTGGTCTTTTCAGAAACAGAGCATTCCGATAGGATTGAACA    800
                     .|||||||..|.||.|||||.||.||.|..|||||.||.||||||||.||
RBAM_010090__    751 TTGCTCGGACTCGTGTTTTCGGAGACGGCCCATTCTGACAGGATTGAGCA    800

BSNT_01683___    801 CCTCGTTGTTCCGTTTCGCGACTTCTTCGGTTCGATGTTCTTTTTCAGCT    850
                     .||.||.||.|||||.||.|||||.|||||..|.|||||.||.|||||||
RBAM_010090__    801 TCTTGTCGTGCCGTTCCGTGACTTTTTCGGGGCCATGTTTTTCTTCAGCT    850

BSNT_01683___    851 TCGGCCTCAGTATCGATCCGTTTTCGCTTGGTGAAGCGGTTTGGCTTGCG    900
                     ||||.|||||.||.|||||||||||.||.||.||.|||||.||||||||.
RBAM_010090__    851 TCGGTCTCAGCATTGATCCGTTTTCACTCGGAGATGCGGTATGGCTTGCC    900

BSNT_01683___    901 TTGGGTGCAGTGATTTTGACCATTCTGGGAAATTTTATCGCCGGAATGGT    950
                     .|.||.||.||..|..||||.|||...|||||.|||||.|||||.|||.|
RBAM_010090__    901 CTCGGCGCCGTTCTGCTGACGATTGCCGGAAACTTTATTGCCGGCATGAT    950

BSNT_01683___    951 GGCAGGACGACGCGCAGGGCTTTCTCATAAGGCTTCATCGAATATCGGGC   1000
                     .||.||.||.||.||.||||||||||||||.||.||.||.||||||||||
RBAM_010090__    951 CGCCGGGCGCCGGGCGGGGCTTTCTCATAAAGCATCGTCTAATATCGGGC   1000

BSNT_01683___   1001 TGACGATCGTATCGCGGGGAGAATTTTCGATTATCGTTGCGAATCTCGGA   1050
                     ||||.||.||.||.||.||.|||||.||.||||||||.||.||||||||.
RBAM_010090__   1001 TGACCATTGTGTCACGCGGCGAATTCTCCATTATCGTCGCAAATCTCGGC   1050

BSNT_01683___   1051 ATAGCCGGCGGACTGTCAGC--CACATTAAAGCCGTTTGCCGCATTATAT   1098
                     ||.||||||||.|||||.||  ||| ||||| ||.||.|||||.||||||
RBAM_010090__   1051 ATCGCCGGCGGCCTGTCCGCTTCAC-TTAAA-CCTTTCGCCGCCTTATAT   1098

BSNT_01683___   1099 GTCCTCATTCTGGCGATTTTGGGACCGCTTG-TCACAAAGGAATCAAAAC   1147
                     ||..|.||.|||||.||.||.|| ||..||| ||||.||.|||||.||.|
RBAM_010090__   1099 GTTTTGATACTGGCCATCTTCGG-CCCTTTGCTCACGAAAGAATCGAAGC   1147

BSNT_01683___   1148 GAATTTACCGCTTGCTGAACAAGGTATTTAAATGGAA---GCCTGATGTT   1194
                     |.||.||.|.|.||.||||||..||.||.||||||||   ||||||....
RBAM_010090__   1148 GGATATATCTCCTGTTGAACAGCGTGTTCAAATGGAAGACGCCTGAAAAG   1197

BSNT_01683___   1195 CAGCCCGCAAAAAAACAGGGATAA   1218
                     .|| |||||.|||     ..||||
RBAM_010090__   1198 AAG-CCGCAGAAA-----TCATAA   1215


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