Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01687 and RBAM_010120

See Amino acid alignment / Visit BSNT_01687 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01687___yhaR.1.9828.seq
#    -bsequence dna-align/RBAM_010120___yhaR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01687___yhaR-RBAM_010120___yhaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01687___yhaR-RBAM_010120___yhaR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01687___yhaR
# 2: RBAM_010120___yhaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity:     552/847 (65.2%)
# Similarity:   552/847 (65.2%)
# Gaps:         110/847 (13.0%)
# Score: 1742.0
# 
#
#=======================================

BSNT_01687___      1 ATGTATAGGAGAAAGAAAAAAGAAAGCGTATACTTGGAGGTGCTTCATAT     50
                                                                     ||
RBAM_010120__      1 ------------------------------------------------AT      2

BSNT_01687___     51 GGAGTTTGTTCAATATGCATGTAATGGGGCCG-TTGCAGAGATTATCCTG     99
                     |.|||.|.|||..|||| |.|.||.|||...| ||||.||||||.|.|||
RBAM_010120__      3 GCAGTATATTCGCTATG-AAGAAAAGGGAAAGATTGCGGAGATTGTGCTG     51

BSNT_01687___    100 AATCGGCCTGATGCC-----CATCACGCCCTGAATGAACAGTTGCTGTCT    144
                     ||.||||||||   |     ||  ||||.|||||||||||..||||....
RBAM_010120__     52 AACCGGCCTGA---CAGTTACA--ACGCGCTGAATGAACAAATGCTCCGG     96

BSNT_01687___    145 GAATTGAAGGAGGCAGTCGAAATGGCGGCTGCAAGCGAGGCGCTCATCGT    194
                     ||||||.|..|.|||..||..|||||.||.|..||.||||||||.|||||
RBAM_010120__     97 GAATTGGAAAACGCATGCGTGATGGCAGCCGACAGTGAGGCGCTTATCGT    146

BSNT_01687___    195 TCTTCT--GAGAGGAAG--CGGGAAAGGCTTTTCGGCCGGTGGTGATAT-    239
                     .|||.|  |.|.|||||  |||    ||.|||||.||.||.|||||||| 
RBAM_010120__    147 CCTTTTGCGGGGGGAAGGCCGG----GGATTTTCCGCGGGCGGTGATATC    192

BSNT_01687___    240 CAGAATGATGACGTCAGAGCATGACCCTGATCAATTTAAACGGCTGATGG    289
                     ||| |||||||||||.||.|||||..|.|...|||.|.|||||||.|||.
RBAM_010120__    193 CAG-ATGATGACGTCTGATCATGATTCAGGAGAATATGAACGGCTCATGA    241

BSNT_01687___    290 ATACGATTGAGGCTGTCACCTTGAATTTATATCAGATGAAGAAA---GTG    336
                     |.|.|||.||..|..|.||..|||...|.|||.|.|||||.|||   |||
RBAM_010120__    242 AAATGATCGAATCCATTACACTGACGCTCTATGATATGAAAAAAATTGTG    291

BSNT_01687___    337 ACAATTGCAGCCATTCATGGTGCTGCTGCGGGACTGGGCCTGAGTTTGGC    386
                        ||.||.|||||.||.||.|||||.|||||.||.||.||||||||  |
RBAM_010120__    292 ---ATAGCCGCCATCCACGGAGCTGCGGCGGGGCTCGGGCTGAGTTT--C    336

BSNT_01687___    387 GCTTTGTGCG--GACATTGTGCTCGCTGAAAAAAACGCCGTCCTCGCGAT    434
                     ||.|||||||  ||..|.||||||||||||.||||||||..|||||||||
RBAM_010120__    337 GCGTTGTGCGCCGATGTGGTGCTCGCTGAAGAAAACGCCCGCCTCGCGAT    386

BSNT_01687___    435 GAATTTTATCGGCATTGGGCTTGTTCCGGACGGCGGAGGACATTATTTGC    484
                     ||||||.||||||||.||..|.|||||.||.||.|||||.||||||||..
RBAM_010120__    387 GAATTTCATCGGCATCGGATTGGTTCCCGATGGAGGAGGCCATTATTTAT    436

BSNT_01687___    485 TGAAAAAAAGAATCGGTGA-AGCAAAAGCGAAAAAACTGATTTGGAGCGG    533
                     |.|..|.|.|..||||||| |.| .|||||||||||||||||||||||||
RBAM_010120__    437 TAATGAGACGCGTCGGTGAGATC-GAAGCGAAAAAACTGATTTGGAGCGG    485

BSNT_01687___    534 AAAAAAACTATCTGCCTCAGAAGCTGCCGATATGGGGCT---TCTT---G    577
                     ..|||||.|..||||...|.||||.|      ||.||||   .|||   |
RBAM_010120__    486 TGAAAAATTGCCTGCTGAAAAAGCGG------TGCGGCTCAAGCTTGCCG    529

BSNT_01687___    578 ATGGGACATTTGCCGGAGACCCTGCCGAAGGCGCAAGACCCATTATCGAA    627
                     |.|.|...||...|||.|.||||||.||.||.|||..|||...|||||| 
RBAM_010120__    530 ACGAGCTGTTCAGCGGCGGCCCTGCGGAGGGGGCACAACCGTATATCGA-    578

BSNT_01687___    628 ACCCTGTTG--GCCT-CCCCTCTTTTGGCGATGATCGAAACGAAAGCTAT    674
                       ||..|||  ||.| |.||.||.|..||||||||.||||||||.|||||
RBAM_010120__    579 --CCGATTGCTGCATGCGCCGCTGTCAGCGATGATTGAAACGAAGGCTAT    626

BSNT_01687___    675 TTTTCAAAGCCTCCAGATTGAAGAAC----TGAAAAAAGTGCTATCCCTT    720
                     ||.|||.||||||||.||    .|.|    |.|||.|.||..|.||.|||
RBAM_010120__    627 TTATCAGAGCCTCCATAT----CAGCCGGTTAAAAGATGTTTTGTCTCTT    672

BSNT_01687___    721 GAGCGCAGCGCCCAAGAGAGAATGAGAAGGACCAAGGATCACCAAGAAGG    770
                     ||.||.|..|||||.||.|..|||||||..||..|.|||||..||||.||
RBAM_010120__    673 GAACGAAAGGCCCAGGAAAATATGAGAAAAACGGATGATCATAAAGAGGG    722

BSNT_01687___    771 AATCCGTGCCTTTTTAGAAAAACGGGAGCCGAAGTTTCAAGC-GTAA    816
                     .|||.|.||||||||||||||||||..||||.|.||| ||.| ||||
RBAM_010120__    723 CATCTGCGCCTTTTTAGAAAAACGGACGCCGCAATTT-AACCGGTAA    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01687 and RBAM_010120

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
