Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01690 and RBAM_010140

See Amino acid alignment / Visit BSNT_01690 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01690___yhaP.1.9828.seq
#    -bsequence dna-align/RBAM_010140___yhaP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01690___yhaP-RBAM_010140___yhaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01690___yhaP-RBAM_010140___yhaP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01690___yhaP
# 2: RBAM_010140___yhaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity:     951/1305 (72.9%)
# Similarity:   951/1305 (72.9%)
# Gaps:          90/1305 ( 6.9%)
# Score: 3340.5
# 
#
#=======================================

BSNT_01690___      1 ATGAATAAATTTTGGATCATGCTTTCTCATACATACAAAAATAAGATTAT     50
                     |||||||||||||||||.|||||.|.|||||||||.|||||.||.||...
RBAM_010140__      1 ATGAATAAATTTTGGATTATGCTGTTTCATACATATAAAAACAAAATCGC     50

BSNT_01690___     51 GGCAAAATCCTTTATTATTTCGACTGTCATCACGGTGCTGCTTGTTTTAG    100
                     |.||||.||.||.|||||||||||.|.|||.||.||..|..|.||.||||
RBAM_010140__     51 GACAAAGTCATTCATTATTTCGACCGCCATTACCGTTTTATTAGTATTAG    100

BSNT_01690___    101 TTGTAACGAATCTGGAGTCGATCATTTCTTTGTTTCAA---GGTGACGAT    147
                     ..||.||.||.|||.|.|||||.||.||..||||||||   |.|||||  
RBAM_010140__    101 CGGTGACCAACCTGCAATCGATTATATCCGTGTTTCAATCGGATGACG--    148

BSNT_01690___    148 GCGAAAG-AAAAAATCGCCGTTGTTGATGAAACAAACGAATTATATCCGG    196
                       |.||| |..|||||||.||..||||||||||...||...|.||.||||
RBAM_010140__    149 --GCAAGCAGCAAATCGCGGTGATTGATGAAACGGGCGGGCTGTACCCGG    196

BSNT_01690___    197 TTTTTTCTAAGCAGCTGAAAGCGGTGGATACTGACGGCGATCT---TGAT    243
                     ..|||.|.||.|||||.|||||||.||||||.|||...|||||   .|..
RBAM_010140__    197 CGTTTGCAAAACAGCTTAAAGCGGCGGATACAGACAATGATCTGCAGGCA    246

BSNT_01690___    244 GTGAAGCTGTCGAAGCAATCGGAGGATGAGGTCACAAAGCAAGTCAAAGA    293
                     |||.|   |.|||||.|.||.||..|.||.|.|..|||||..||||||||
RBAM_010140__    247 GTGGA---GACGAAGGAGTCCGAAAAAGATGCCGTAAAGCGTGTCAAAGA    293

BSNT_01690___    294 ---TGAATCACTCGATGGCATGCTCATCATCAAACGAGATGAAAAAGGGA    340
                        |||||   ..||.||..||.|.|||||||.||.||||.|||||||.|
RBAM_010140__    294 CGGTGAAT---GGGACGGACTGTTTATCATCAGACAAGATCAAAAAGGAA    340

BSNT_01690___    341 CCATTTCAGGAACATATAAAGCGTTAACGATTTCTGATGAA--AGCACGT    388
                     |.||..|||||.|.||.||||||.|.||.||||||||||||  ||  |||
RBAM_010140__    341 CGATAACAGGAGCCTACAAAGCGCTGACCATTTCTGATGAATCAG--CGT    388

BSNT_01690___    389 ATCAAAC-GCTGCAGCAGGCGCTGACGCAAACCAAAACAGCTGTCGGAAC    437
                     || |||| .||..|||||||..|.||.||.||.|||||.|||||.|.|||
RBAM_010140__    389 AT-AAACTTCTCAAGCAGGCTTTAACCCAGACAAAAACCGCTGTTGAAAC    437

BSNT_01690___    438 AGCGGAGCTCGGCGTGTC-GCAGGAAACGATTAGCAGCCTTTA---TGCG    483
                     .||..||||||||.|.|| ||||.|||.| |.||||||||.||   |.||
RBAM_010140__    438 CGCCAAGCTCGGCATTTCGGCAGAAAAAG-TCAGCAGCCTCTACACTCCG    486

BSNT_01690___    484 CCCGTTACTGTGG--GGCAG--AAG--GCGCTGAAAGAAGGGGCAAAGTC    527
                     ||         ||  |.|||  |||  ||||||.||.|||||||.||.||
RBAM_010140__    487 CC---------GGAAGTCAGCAAAGACGCGCTGGAAAAAGGGGCGAAATC    527

BSNT_01690___    528 TGAGGAAGAGCTTGGCCAGACGGTA---GGGCTTGTTTACATTATGCTGT    574
                     |||||||||||||||.||   ||||   ||||||||.|||||.|||||||
RBAM_010140__    528 TGAGGAAGAGCTTGGTCA---GGTAATGGGGCTTGTATACATCATGCTGT    574

BSNT_01690___    575 TCGTCATTTATTTTTCGGTGATTATGTATGCCAGCATGATTGCGATGGAG    624
                     |.|||||.||.||.||.||.||.|||||.||.|||||||||||||||||.
RBAM_010140__    575 TTGTCATCTACTTCTCAGTTATCATGTACGCAAGCATGATTGCGATGGAA    624

BSNT_01690___    625 GTCGCTACAGAAAAATCTTCGCGAGTTATGGAAATCCTGATCTCAAGTAT    674
                     ||.||.||.||||||||.||.||.||.||||||||..|.||.|||||.||
RBAM_010140__    625 GTGGCGACGGAAAAATCGTCCCGCGTCATGGAAATTTTAATTTCAAGCAT    674

BSNT_01690___    675 GCCGCCGATCCAGCAAATGTTTGCAAAGCTGCTTGGTATCGGGCTTGTCG    724
                     |||||||||.|||||.||||||||.||.|||.|.|||||||.|||.||.|
RBAM_010140__    675 GCCGCCGATTCAGCAGATGTTTGCCAAACTGTTCGGTATCGCGCTCGTGG    724

BSNT_01690___    725 GGATCACACAGCTTGCTATTATTATAGGAGCCGGCTCTCTGTCGCTTAAG    774
                     |||||||||||.||||..|..|.||.|..||.||.|.|||.||.||.|||
RBAM_010140__    725 GGATCACACAGTTTGCGGTGCTGATTGCGGCGGGTTATCTCTCACTGAAG    774

BSNT_01690___    775 CTGAAC---CAAAAGAGCGAAACGGCTTC----ATCTGTCGGCGGATTCC    817
                     ||||||   |||||   .||..||.|.||    |||.||    |.|||.|
RBAM_010140__    775 CTGAACCCTCAAAA---TGATGCGTCGTCGCCGATCAGT----GCATTTC    817

BSNT_01690___    818 TTAATCTGACCGACGT----ATCTGCAACCACTGTCATCTATGCTGTCAT    863
                     |.|||.|.||.||.||    .|||    |.||..|..|||||||||||||
RBAM_010140__    818 TCAATTTTACGGATGTTCCCGTCT----CGACGATAGTCTATGCTGTCAT    863

BSNT_01690___    864 TTTCTTTTTGCTCGGATACTTTTTGTACGCGACACTTGCCGCGTTTCTCG    913
                     |||||.|||||||||.||.|||.|.||||||||.||||||||||||||||
RBAM_010140__    864 TTTCTATTTGCTCGGCTATTTTCTTTACGCGACGCTTGCCGCGTTTCTCG    913

BSNT_01690___    914 GCAGTGTCGTCAGCAGAATAGAGGACGTGCAGCAAACGA-TCACGCCGAT    962
                     |||||||.||||||.|.|||||||||||.|||||.|||| ||| ||||||
RBAM_010140__    914 GCAGTGTTGTCAGCCGGATAGAGGACGTACAGCAGACGATTCA-GCCGAT    962

BSNT_01690___    963 GACGCTTTTGGTTGTCGCCGGTTTTATGATCGCGATGTTCGGTTT---GA   1009
                     |....||||.||.||.||.||||||||||||||.||||||||..|   .|
RBAM_010140__    963 GGTTTTTTTAGTCGTGGCAGGTTTTATGATCGCCATGTTCGGCATCGGCA   1012

BSNT_01690___   1010 ATGCGCCTGACGCAGGATTTATTACGGTAACTTCGTTTATTCCGTTCTTT   1059
                     ||   ||||||||.||.||||||||.||.||.||.|..||||||||.||.
RBAM_010140__   1013 AT---CCTGACGCCGGTTTTATTACCGTTACATCTTACATTCCGTTTTTC   1059

BSNT_01690___   1060 ACGCCAATGATTATGTTCCTGCGCGTCGGCATGCTTGATATTCCGTTCTG   1109
                     |||||.|||||||||||..|.||||||||.|||||.|||||.|||||.||
RBAM_010140__   1060 ACGCCGATGATTATGTTTTTACGCGTCGGGATGCTCGATATCCCGTTTTG   1109

BSNT_01690___   1110 GCAGGCGGCTGTCGGAATCGGAATCACACTGCTCACCATTGTCATACT--   1157
                     ||||||.||.|.||||||||...|.|||||||||||.||.||.|| ||  
RBAM_010140__   1110 GCAGGCTGCGGCCGGAATCGCCCTGACACTGCTCACTATCGTGAT-CTTT   1158

BSNT_01690___   1158 --GGCCGTTATCGGCGCCAGAATTTATAAAGGCGGTGTATTAATTTACGG   1205
                       |||.|   |||||||.|.||||||.||||||||.||.||.||||||||
RBAM_010140__   1159 GCGGCGG---TCGGCGCGAAAATTTACAAAGGCGGCGTTTTGATTTACGG   1205

BSNT_01690___   1206 CAATTCAAGCGCGTTCAAAGCGATCAAACAAGCGCTACGTTTAGCGAAAA   1255
                     .||..|.||||..|||||||||||||||||||||||.||..|..|.||||
RBAM_010140__   1206 AAACGCCAGCGGATTCAAAGCGATCAAACAAGCGCTGCGCATCTCCAAAA   1255

BSNT_01690___   1256 ACTGA   1260
                     |.|.|
RBAM_010140__   1256 AATAA   1260


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