Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01698 and RBAM_010190

See Amino acid alignment / Visit BSNT_01698 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_01698___prsA.1.9828.seq
#    -bsequence dna-align/RBAM_010190___prsA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01698___prsA-RBAM_010190___prsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01698___prsA-RBAM_010190___prsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01698___prsA
# 2: RBAM_010190___prsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 897
# Identity:     697/897 (77.7%)
# Similarity:   697/897 (77.7%)
# Gaps:          57/897 ( 6.4%)
# Score: 2732.5
# 
#
#=======================================

BSNT_01698___      1 ATGAAGAAAATCGCAATAGCAGCTATCACTGCTACAAGCATCCTCGCTCT     50
                     ||||||||||||||.|||||||||||.||.||.||.|||.||||.|||||
RBAM_010190__      1 ATGAAGAAAATCGCGATAGCAGCTATTACGGCAACGAGCGTCCTGGCTCT     50

BSNT_01698___     51 CAGTGCTTGCAGCAGCGGCGACAAAGAAGTCATCGCAAAAACAGACGCAG    100
                     |||.||||||||||||||||||||.||.||.||.||.||.||.||.||.|
RBAM_010190__     51 CAGCGCTTGCAGCAGCGGCGACAACGACGTGATTGCCAAGACGGATGCCG    100

BSNT_01698___    101 GCGATGTAACAAAAGGCGAGCTTTACACAAACATGAAGAAAACAGCTGGC    150
                     |..|||||||||||||||||||.|||||.||||||||.|||||.||.|||
RBAM_010190__    101 GAAATGTAACAAAAGGCGAGCTCTACACGAACATGAAAAAAACCGCGGGC    150

BSNT_01698___    151 GCAAGCGTACTGACACAGCTAGTGCAAGAAAAAGTATTGGACAAGAAGTA    200
                     |||||.||.|||||||||||.||.||||||||||||||.|..||.||.||
RBAM_010190__    151 GCAAGTGTGCTGACACAGCTCGTACAAGAAAAAGTATTAGCAAAAAAATA    200

BSNT_01698___    201 TAAAGTTTCGGATAAAGAAATTGACAACAAGCTGAAAGAATACAAAACGC    250
                     .|||||..|||||||||||||.||.|.||||||||||||.||||||||||
RBAM_010190__    201 CAAAGTAACGGATAAAGAAATCGATACCAAGCTGAAAGAGTACAAAACGC    250

BSNT_01698___    251 AGCTTGGCGATCAATATA-CTGCCCTCGAAAAGCAATATGGCAAGGATTA    299
                     ||||.||||||||.||.| || ||||..||.||||.||.|||.|.|||||
RBAM_010190__    251 AGCTCGGCGATCAGTACAGCT-CCCTTAAACAGCAGTACGGCGAAGATTA    299

BSNT_01698___    300 CCTGAAAGAACAAGTAAAATATGAATTGCTGACACAAAAAGCGGCTAAAG    349
                     |||||||||.||.||.||.||.|||.||||..|||||||||||||.||||
RBAM_010190__    300 CCTGAAAGATCAGGTGAAGTACGAACTGCTTGCACAAAAAGCGGCGAAAG    349

BSNT_01698___    350 ATAACATCAAAGTAACAGATGATGAAATTAAAGAATACTGGGAAGGCTTA    399
                     |.|||||||||||.||.||....||.|..||||||||.|..||.||||||
RBAM_010190__    350 ACAACATCAAAGTGACTGACTCCGATACGAAAGAATATTACGACGGCTTA    399

BSNT_01698___    400 AAAGGCCAGATTCGCGCAAGCCACATCCTTGTCGCTGACAAAAAGACAGC    449
                     |||||..|.||.|||||.||||||||||||||||||||||||||||||||
RBAM_010190__    400 AAAGGTAAAATCCGCGCGAGCCACATCCTTGTCGCTGACAAAAAGACAGC    449

BSNT_01698___    450 TGAGGAAATAGAGAAAAAGCTGAAAAAAGGCGAGAAATTTGATGCCCTTG    499
                     |||.|||.|.||||||||||||||||||||||||||.|||||..|.||||
RBAM_010190__    450 TGACGAAGTGGAGAAAAAGCTGAAAAAAGGCGAGAAGTTTGAAACGCTTG    499

BSNT_01698___    500 CGAAGGAATACTCTACAGACACAGGCTCAGCTACA---AACGGTGGCGAA    546
                     ||||.|||||.||.||.||||   |||||   |.|   |||||.|||||.
RBAM_010190__    500 CGAAAGAATATTCAACTGACA---GCTCA---AAAGACAACGGCGGCGAC    543

BSNT_01698___    547 CTTGGCTGGATTTCAAAAGATAACGAA---CAACTGGATTCCACATTCAG    593
                     |||||||||  |||    |||||  ||   ||| |||||...||||||||
RBAM_010190__    544 CTTGGCTGG--TTC----GATAA--AAAGTCAA-TGGATGAAACATTCAG    584

BSNT_01698___    594 AAAAGCTGCATTCAAGTTGAAA-----ACAAACGAAGTCAGCGATCCTGT    638
                     .||||||||||||....|||||     ||     |||||||||||||.||
RBAM_010190__    585 CAAAGCTGCATTCGGCCTGAAAGTCGGAC-----AAGTCAGCGATCCGGT    629

BSNT_01698___    639 GAAAACACAATTTGGCTACCATATCATCAAAAAGACTGAAGAACGCGGCA    688
                     .||||||.||||.||.||.|||||||||||||||||.|||||||||||||
RBAM_010190__    630 CAAAACAAAATTCGGTTATCATATCATCAAAAAGACAGAAGAACGCGGCA    679

BSNT_01698___    689 AATACGATGATATGAAAAAAGAACTGAAATCTGAAGTGCTTGAACAAAAA    738
                     ||||.|||||.||||||||||||||||||...|||||.|||.|.||.|||
RBAM_010190__    680 AATATGATGACATGAAAAAAGAACTGAAAGAAGAAGTTCTTAAGCAGAAA    729

BSNT_01698___    739 CTAAATGACAGCAATGCCGTTCAGGAAGCTGTTCAAAAAGTCATGAAGAA    788
                     .||||.||||.|...||.||.||||..||..||||||||||||||||.||
RBAM_010190__    730 TTAAACGACAACTCAGCTGTACAGGCGGCAATTCAAAAAGTCATGAAAAA    779

BSNT_01698___    789 GGCTGACATCGAAGTAAAAGATAAAGATCTGAAAGCCACATTTAATACAT    838
                     .||||||.|..||||..||||.|||||..|.||||.|||.|||||.|   
RBAM_010190__    780 AGCTGACGTAAAAGTGGAAGACAAAGACTTAAAAGACACGTTTAACA---    826

BSNT_01698___    839 CTTCAACAAGCAACAGCACTTCTTCATCTTCAAGCAATTCTAAATAA    885
                     |||||            ||||||||    |.||     |||||||||
RBAM_010190__    827 CTTCA------------ACTTCTTC----TGAA-----TCTAAATAA    852


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