Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01706 and RBAM_010240

See Amino acid alignment / Visit BSNT_01706 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_01706.1.9828.seq
#    -bsequence dna-align/RBAM_010240___yhaH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01706-RBAM_010240___yhaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01706-RBAM_010240___yhaH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01706
# 2: RBAM_010240___yhaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity:     287/409 (70.2%)
# Similarity:   287/409 (70.2%)
# Gaps:          59/409 (14.4%)
# Score: 1119.0
# 
#
#=======================================

BSNT_01706         1 ATGCTGAATGAATCCTATTTTGAAGAAAAAGACGGGGTGATTGTAATGGC     50
                                                                  |||||
RBAM_010240__      1 ---------------------------------------------ATGGC      5

BSNT_01706        51 -GAGCGGACGTTCTCTATTAACAGGACTATTCGTAGGCGGCATCATCGGA     99
                      || |||||||||.||.||||||||.||.|||||||||||..|.||||||
RBAM_010240__      6 TGA-CGGACGTTCCCTTTTAACAGGCCTTTTCGTAGGCGGATTGATCGGA     54

BSNT_01706       100 GGAGCAGCGGTTCTTCTTACT----GCACCTTCCTCAGGAAAGCAGCTGC    145
                     ||.|||||||    |.|||||    ||.|||||.||.|||||..||||||
RBAM_010240__     55 GGCGCAGCGG----TGTTACTCTCGGCTCCTTCATCCGGAAAAGAGCTGC    100

BSNT_01706       146 GTGAAAAAATGAAAACCAATTATGATTCTTTTGAAGAAACAATCAAACGC    195
                     |.|..|||||.|||.|.||||...||||..||||.||.|||||||||||.
RBAM_010240__    101 GGGGCAAAATCAAAGCGAATTGCAATTCAATTGAGGACACAATCAAACGG    150

BSNT_01706       196 TTAAAGTCAGACGGGCTTGCATTAAAAGACCAGCTGATCAAAGCGGCAAA    245
                     |||||...||||||..|.||..|.||.||||||||..||.||.||||.||
RBAM_010240__    151 TTAAAAAAAGACGGAATGGCGCTTAAGGACCAGCTTGTCCAAACGGCGAA    200

BSNT_01706       246 AGAAAGCACGGATGTTATTAAAGACGTGGGCGGCGAGCTCCAAACGTCA-    294
                     |||||||.|.||.||.|||||||||||.|||||.|||||.||.||  || 
RBAM_010240__    201 AGAAAGCGCAGAAGTCATTAAAGACGTAGGCGGAGAGCTTCAGAC--CAG    248

BSNT_01706       295 -ATTAAAAAATGGCAGGAAGAGATCAAGCCTCACCAGCAGGATCTGCAAA    343
                      |||||||..||||||||.||.|||||.||.||||||||||||||.||.|
RBAM_010240__    249 CATTAAAAGGTGGCAGGAGGAAATCAAACCGCACCAGCAGGATCTTCAGA    298

BSNT_01706       344 AAGAAATTGCCGATATCGAAGAGAAAATCAGACAGCTGGAGAAAACCTTA    393
                     |.|||||.||.|||||.|||||||||||||||||||||||||||||||||
RBAM_010240__    299 AGGAAATCGCTGATATTGAAGAGAAAATCAGACAGCTGGAGAAAACCTTA    348

BSNT_01706       394 CAAAACTAA    402
                     |||||||||
RBAM_010240__    349 CAAAACTAA    357


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