Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01709 and RBAM_010260

See Amino acid alignment / Visit BSNT_01709 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:24
# Commandline: needle
#    -asequence dna-align/BSNT_01709___serC.1.9828.seq
#    -bsequence dna-align/RBAM_010260___serC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01709___serC-RBAM_010260___serC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01709___serC-RBAM_010260___serC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01709___serC
# 2: RBAM_010260___serC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1094
# Identity:     844/1094 (77.1%)
# Similarity:   844/1094 (77.1%)
# Gaps:          28/1094 ( 2.6%)
# Score: 3185.0
# 
#
#=======================================

BSNT_01709___      1 ATGGAACGTACAACGAATTTTAACGCAGGTCCTGCAGCGCTGCCACTGGA     50
                     ||||||||||||||||||||.||.|||||.||.|||||.||.||||||||
RBAM_010260__      1 ATGGAACGTACAACGAATTTCAATGCAGGACCCGCAGCCCTTCCACTGGA     50

BSNT_01709___     51 AGTTCTGCAAAAAGCACAGAAAGAATTTATTGATTTTAACGAATCCGGCA    100
                     .||.||||||||||||||.|||||||||.|..|.||.||.||..||||||
RBAM_010260__     51 TGTGCTGCAAAAAGCACAAAAAGAATTTGTCAACTTCAATGATACCGGCA    100

BSNT_01709___    101 TGTCTGTTATGGAGCTTTCCCACCGCAGCAAAGAGTATGAAGCGGTGCAC    150
                     ||||.||.||||||||.||||||||.||||..||.|||||.|||||||||
RBAM_010260__    101 TGTCCGTCATGGAGCTGTCCCACCGAAGCACGGAATATGATGCGGTGCAC    150

BSNT_01709___    151 CAAAAAGCGAAAAGCC-TCTTAATCGAACTGATGGGCATTCCGGAAGATT    199
                     ||||||||.||||||| |||.|| .||||||||||..|||||.||.||||
RBAM_010260__    151 CAAAAAGCCAAAAGCCTTCTGAA-AGAACTGATGGATATTCCCGACGATT    199

BSNT_01709___    200 ACGATATCTTGTTTCTTCAAGGCGGGGCAAGCCTTCAATTCTCAATGCTT    249
                     |||||||.||.||||||||||||||.|||||||||||||||||.|||||.
RBAM_010260__    200 ACGATATTTTATTTCTTCAAGGCGGCGCAAGCCTTCAATTCTCCATGCTG    249

BSNT_01709___    250 CCGATGAACTTTTTAACACCTGAAAAAACCGCACATTTTGTGATGACAGG    299
                     |||||||||||||||||.||.||..||||.||.||.||..|..|.||.||
RBAM_010260__    250 CCGATGAACTTTTTAACGCCGGAGCAAACGGCGCACTTCATCGTAACGGG    299

BSNT_01709___    300 CGCTTGGTCTGAAAAAGCACTGGCAGAAACGAAATTGTTCGGGAACACGT    349
                     |||.|||||||||||||||||.||.||..|||||.|||||||.|||||.|
RBAM_010260__    300 CGCATGGTCTGAAAAAGCACTCGCCGAGGCGAAACTGTTCGGAAACACAT    349

BSNT_01709___    350 CTATCACCGCTACTAGTGAAACAGA---CAATTACAGCTATATTCCAGAG    396
                     |..||||.||.||.||.|   ||||   .||..|||.|.|.||.||.||.
RBAM_010260__    350 CCGTCACGGCAACAAGCG---CAGATTCAAACCACAACCACATACCGGAA    396

BSNT_01709___    397 GTTGACCT-TACGGATGTAAAAGACGGCGCATATTTACATATCACATCCA    445
                     |..||||| |..||| .|.|||||||||||.||..|.|||||.||.||.|
RBAM_010260__    397 GCGGACCTCTCAGGA-ATCAAAGACGGCGCCTACCTGCATATTACGTCAA    445

BSNT_01709___    446 ACAATACAATTTTCGGCACTCAGTGGCAGGAGTTTCCGAATTCTCCTATT    495
                     ||||.||.||||||||.||.||||||.|.|||||.||||||||..|.||.
RBAM_010260__    446 ACAACACGATTTTCGGAACGCAGTGGAAAGAGTTCCCGAATTCAACAATC    495

BSNT_01709___    496 CCGCTCGTAGCCGACATGTCCAGCGATATTTTAAGCAGAAAAATCGATGT    545
                     ||||||||||||||||||||.|||||.||..|.|||||||||||.|||||
RBAM_010260__    496 CCGCTCGTAGCCGACATGTCAAGCGACATCCTGAGCAGAAAAATTGATGT    545

BSNT_01709___    546 GTCCAAA---TTTGATGTGATCTACGGAGGCGCCCAAAAGAACCTCGGCC    592
                        ||||   ||||||||.|||||.||.||.|||||.||.||||||||.|
RBAM_010260__    546 ---CAAAACGTTTGATGTCATCTATGGCGGAGCCCAGAAAAACCTCGGGC    592

BSNT_01709___    593 CTTCCGGCGTGACTGTAGTCATTATGAAAAAAAGCTGGCTGAAAAATGAA    642
                     |.||||||||.||.||.|||||.|||||||||...|||||..||||.|||
RBAM_010260__    593 CGTCCGGCGTCACGGTCGTCATCATGAAAAAATCATGGCTTGAAAACGAA    642

BSNT_01709___    643 AATGCGAACGTCCCAAAAATCCTGAAATATTC----CACACATGTCAAAG    688
                     ||.||.||||||||.|||||..|||||||.||    ||||||    ||||
RBAM_010260__    643 AACGCCAACGTCCCTAAAATGTTGAAATACTCCACTCACACA----AAAG    688

BSNT_01709___    689 CGGATTCACTCTACAACACTCCGCCGACATTTGCGATTTATATGCTGAGC    738
                     |.||||||||.||.||.||.|||||.||||||||||||||||||||||||
RBAM_010260__    689 CCGATTCACTGTATAATACGCCGCCTACATTTGCGATTTATATGCTGAGC    738

BSNT_01709___    739 CTCGTTCTGGAATGGCTCAAGGAAAACGGCGGTGTGGAAGCTGTTGAACA    788
                     |||||.||.||||||||....||||||||||||||.|||||.|.|||||.
RBAM_010260__    739 CTCGTCCTTGAATGGCTGGCTGAAAACGGCGGTGTCGAAGCGGCTGAACG    788

BSNT_01709___    789 GCGCAATGAACAAAAAGCGCAGGTTCTCTACAGCTGTATTGATGAAAGCA    838
                     |||||||.|..||||.||..|.||.||.|||.||...||.||.|.||||.
RBAM_010260__    789 GCGCAATCAGGAAAAGGCCGATGTCCTGTACGGCACAATCGACGCAAGCG    838

BSNT_01709___    839 ACGGCTTCTATAAAGGTCATGCCAGAAAGGACAGCCGCTCACGCATGAAT    888
                     .|||.||.||....||.||||||..|||.||||||||.||.|.||||||.
RBAM_010260__    839 GCGGGTTTTACGCGGGGCATGCCGCAAAAGACAGCCGTTCTCACATGAAC    888

BSNT_01709___    889 GTCACCTTCACGCTTCGGGATGACGAAT-TAACGAAAACATTCGTCCAGA    937
                     |||||.|||||.||.||.|| .|..|.| |.|||||||.||||||..|..
RBAM_010260__    889 GTCACGTTCACCCTCCGCGA-CAGCAGTCTCACGAAAAAATTCGTTGAAG    937

BSNT_01709___    938 AAGCAAAAGATGCGAAGATGATCGGCCTTGGCGGACACCGTTCGGTGGGA    987
                     ||||.||||..||.||.||||.|||.||.||.||.|||||.||.||.|||
RBAM_010260__    938 AAGCGAAAGCGGCTAAAATGACCGGACTCGGAGGCCACCGCTCAGTCGGA    987

BSNT_01709___    988 GGCTGCCGCGCTTCTATTTATAACGCGGTCTCTCTCGAAGACTGTGAAAA   1037
                     ||||||.|.||.|||||.||.|||||.|||...||.|..||.||||||||
RBAM_010260__    988 GGCTGCAGGGCGTCTATCTACAACGCCGTCAGCCTGGCTGATTGTGAAAA   1037

BSNT_01709___   1038 ATTAGCTGCGTTCATGAAGAAA-TTCCAGCAGGAAAATGAGTAA   1080
                     |.|.|||..|||.||| ||||| ||||||||||||||.||.|||
RBAM_010260__   1038 ACTGGCTCAGTTTATG-AGAAAGTTCCAGCAGGAAAACGAATAA   1080


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