Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01724 and RBAM_010340

See Amino acid alignment / Visit BSNT_01724 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:25
# Commandline: needle
#    -asequence dna-align/BSNT_01724___pbpF.1.9828.seq
#    -bsequence dna-align/RBAM_010340___pbpF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01724___pbpF-RBAM_010340___pbpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01724___pbpF-RBAM_010340___pbpF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01724___pbpF
# 2: RBAM_010340___pbpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2166
# Identity:    1634/2166 (75.4%)
# Similarity:  1634/2166 (75.4%)
# Gaps:          45/2166 ( 2.1%)
# Score: 6009.5
# 
#
#=======================================

BSNT_01724___      1 ATGTTTAAGATAAAGAAAAAGAAACTTTTTATACC-----TATCATTATT     45
                     |||.|   ||.|||||||||.|.|.|.|||||.||     ||     |||
RBAM_010340__      1 ATGCT---GAAAAAGAAAAAAAGATTCTTTATTCCGGCTGTA-----ATT     42

BSNT_01724___     46 TTAGTGTTAACTGCTTTTCTCGCTTTAATAGGATATATT-TCAATTATTT     94
                     ...|.|..|||.|||||||||||.|||||.|||||.||| || |||||.|
RBAM_010340__     43 GCGGCGGCAACCGCTTTTCTCGCGTTAATCGGATACATTATC-ATTATAT     91

BSNT_01724___     95 TTCTCGGCCATTATGTCATAGATGAAAAAAAGCTTATTCTTCATGCTTCT    144
                     |||||||||||||||||||.||||||||.||..|.||.||.||.||.|||
RBAM_010340__     92 TTCTCGGCCATTATGTCATCGATGAAAAGAAATTAATACTGCACGCATCT    141

BSNT_01724___    145 TCAAAAATTGTTGATCAAAACGGAGATGAGGTTGCAAGCCTGTATACAGA    194
                     ||||||||.||.|||||||||||.|||||..|.||.|||||.|||||.||
RBAM_010340__    142 TCAAAAATCGTCGATCAAAACGGTGATGAAATCGCGAGCCTCTATACGGA    191

BSNT_01724___    195 AAATCGCGAGCCGGTCTCGATCAATGAGATTCC-AAAGCAGGTCAGAGAA    243
                     |||||||||||||||.||.||..|..||.|||| .||| |.||.|||||.
RBAM_010340__    192 AAATCGCGAGCCGGTATCCATTCAGCAGGTTCCGGAAG-ATGTGAGAGAT    240

BSNT_01724___    244 GCGTTTATCGCTGTTGAGGATAAAAGGTTCTATGAGCATCACGGCATTGA    293
                     ||.||||||||.|||||.||||||.||||.||.||.||||||||||||||
RBAM_010340__    241 GCCTTTATCGCCGTTGAAGATAAACGGTTTTACGAACATCACGGCATTGA    290

BSNT_01724___    294 TGCAAAATCTGTCGGAAGGGCAGTGTATCGCGATATATTAGCAGGCGGAA    343
                     ||..||.||||||||..||||.||||..||.|||.|.|||||||||||.|
RBAM_010340__    291 TGTGAAGTCTGTCGGCCGGGCGGTGTTCCGGGATGTTTTAGCAGGCGGCA    340

BSNT_01724___    344 AGGTGGAAGGCGGAAGCACGATCACCCAGCAGCTTGCCAAAAATATTTTT    393
                     |||||||.|||||.||||||||||||||||||||.||.|||||.||||||
RBAM_010340__    341 AGGTGGAGGGCGGCAGCACGATCACCCAGCAGCTGGCGAAAAACATTTTT    390

BSNT_01724___    394 CTGACACATGACAAAACGTTTCTAAGAAAAACAAAAGAAGTGATCATTGC    443
                     |||||.|||||.|||||.|||.|..|.||.||.||.|||||.||.||.||
RBAM_010340__    391 CTGACCCATGATAAAACATTTTTGCGCAAGACGAAGGAAGTCATTATCGC    440

BSNT_01724___    444 GATCAATCTTGAACGGGATTACAGCAAGGACAAGCTGCTTGAAATGTATT    493
                     .|||||||||||.||.||||||||||||||||||||||||||||||||..
RBAM_010340__    441 CATCAATCTTGAGCGTGATTACAGCAAGGACAAGCTGCTTGAAATGTACC    490

BSNT_01724___    494 TAAATCAGCTTTACTTCGGACATGGGGTTTACGGCATACAAGCGGCGTCC    543
                     |.||.||||||||.|||||.|||||.|||||||||||.|||||.||||||
RBAM_010340__    491 TGAACCAGCTTTATTTCGGCCATGGCGTTTACGGCATTCAAGCCGCGTCC    540

BSNT_01724___    544 CACTATTATTTTAATAAAGAAGTAAAAGATTTGACTGTATCTGAAGGCGC    593
                     |||||.||.|||||||||||||||||||||||.||.||..|.|||||.||
RBAM_010340__    541 CACTACTACTTTAATAAAGAAGTAAAAGATTTAACCGTTGCGGAAGGAGC    590

BSNT_01724___    594 TGTTTTGGCCGCTATTCCGAAGGCGCCTTCTACGTACTCTCCAATTTTGC    643
                     .|||.||||.||.||||||||||||||.|||...||.||.||.|||..||
RBAM_010340__    591 CGTTCTGGCAGCGATTCCGAAGGCGCCATCTCTTTATTCGCCGATTCAGC    640

BSNT_01724___    644 ACCCTGATAAAAATAAGGAGCGGCGTGATACAATTCTAGGCATGATGAAT    693
                     |.||.|||||||||||.||.||.||.|||||.|||||.|..||||||||.
RBAM_010340__    641 ATCCGGATAAAAATAAAGAACGCCGCGATACGATTCTTGCAATGATGAAC    690

BSNT_01724___    694 GACCAAGGCTATATCAGTGCGAAAGAGGCTGTCACCGCACAGGGCCGAAC    743
                     |||||||||||||||||.||.||.||.||.||||..||.||||||||.||
RBAM_010340__    691 GACCAAGGCTATATCAGCGCCAAGGAAGCCGTCAGAGCCCAGGGCCGGAC    740

BSNT_01724___    744 GCTTGGACTGCACGTGAAG-AAACAGTCGGAAACACCTTGGTTTGACAGC    792
                     ..|.||.||..|.||.||| ||||| ||.|||||.||||||||||||||.
RBAM_010340__    741 ATTGGGGCTTAATGTCAAGAAAACA-TCAGAAACGCCTTGGTTTGACAGT    789

BSNT_01724___    793 TACATTGACCTTGTGATCAAAGAGGCGGAAGACAAGTATTCCATTTCTGG    842
                     ||.|||||.|||||.|||||.||||||||||||...|||||.||.||.||
RBAM_010340__    790 TATATTGATCTTGTCATCAAGGAGGCGGAAGACCGTTATTCGATGTCAGG    839

BSNT_01724___    843 GGAGCAGCTTCTTCAAGGAGGATACACGATCAAGGTGCCGCTCGATTCGA    892
                     .||.|||||.||||||||.||.||.||||||..|..|.|.||.|||||.|
RBAM_010340__    840 TGAACAGCTGCTTCAAGGCGGTTATACGATCCGGACGTCACTTGATTCCA    889

BSNT_01724___    893 AGCTGCAGAAAACGGCTTACCAGGTGATGAAAGAGGGTAGCTATTATCCC    942
                     ||||||||||||||||.|||....|.|||||.||..|..||||||.|||.
RBAM_010340__    890 AGCTGCAGAAAACGGCATACACCCTCATGAAGGAAAGCGGCTATTTTCCG    939

BSNT_01724___    943 GGAACAGATCAGAATGCCGAGGGAAGCGCGGTCTTTATTAATAACAAGAC    992
                     ||.||.||||||...||.|||||||||||.|||||||||.||||.||.||
RBAM_010340__    940 GGGACGGATCAGGCGGCAGAGGGAAGCGCCGTCTTTATTGATAATAAAAC    989

BSNT_01724___    993 AGGCGGTGTAGAAGCGGCCATCGGCGGAAGGGATTAC---ACATCCAAAG   1039
                     .||.||.||....|||||..||||||||.|.||.|||   |||   ||||
RBAM_010340__    990 CGGAGGCGTGCGCGCGGCGGTCGGCGGACGCGACTACGTGACA---AAAG   1036

BSNT_01724___   1040 GATATAACCGTGTCACAGCTGTCCGCCAGCCGGGTTCCACATTTAAGCCG   1089
                     ||||.|||.|.||.||.||....||.||||||||.||.||.|||||||||
RBAM_010340__   1037 GATACAACAGGGTTACGGCGAAGCGGCAGCCGGGCTCAACGTTTAAGCCG   1086

BSNT_01724___   1090 CTTGCTGTATACGGACCGGCGATGCAGGAAAAGAAATTTAAGCCATATTC   1139
                     .||||.||||||||.||.||.|||||||||.|.||.||.||.||.|||||
RBAM_010340__   1087 ATTGCCGTATACGGGCCCGCCATGCAGGAAGACAAGTTCAAACCGTATTC   1136

BSNT_01724___   1140 TCTATTGAAGGATGAGTTGCAGTCCTACGGAGATTATACGCCGAAAAACT   1189
                     .||..|..|.||..|..||..||||||||..|..|||...||||||||.|
RBAM_010340__   1137 GCTTCTCCAAGACAAACTGACGTCCTACGACGGGTATGAACCGAAAAATT   1186

BSNT_01724___   1190 ACGACAGCCGGTATGAGGGCGAAGTCACTATGTCTGACGCCATTACGTAC   1239
                     |.|||.|.|.|||..||||.|||||.||.|||...||.||.||.||.|||
RBAM_010340__   1187 ATGACGGACAGTACAAGGGGGAAGTGACGATGCAGGATGCGATCACTTAC   1236

BSNT_01724___   1240 AGCAAAAACGCGCCGGCTGTCTGGACGCTGAATGAGATCGGCGTCGAAAC   1289
                     ||||.|||.|||||.|||||||||||..||||..||||||||||.||.||
RBAM_010340__   1237 AGCATAAATGCGCCCGCTGTCTGGACATTGAAGCAGATCGGCGTAGATAC   1286

BSNT_01724___   1290 AGGAAAATCTTAT-TTGA-AAGCAAACGGCATTGATATCCCTGATGAAGG   1337
                     .||||||||.||| |||| ||  |||||||||..|.||..||||..|.||
RBAM_010340__   1287 GGGAAAATCGTATCTTGAGAA--AAACGGCATGAACATTTCTGACAACGG   1334

BSNT_01724___   1338 ACTTGCTCTCGCTCTAGGAGGCTTGGAAAAAGGCGTTTCGCCGCTCCAGC   1387
                     |||.||..|.||.||.||.||..||..|.|||||||..|.|||||.||||
RBAM_010340__   1335 ACTCGCGATTGCGCTTGGCGGTCTGTCAGAAGGCGTCACCCCGCTTCAGC   1384

BSNT_01724___   1388 TTGCCGGCGCGTTTCATACATTTGCCGCGAATGGAACGTATACGGAACCT   1437
                     |||||||.||.|.||||||.|||||.||.||.||||.|||||||.|.||.
RBAM_010340__   1385 TTGCCGGAGCTTATCATACCTTTGCGGCAAACGGAATGTATACGAAGCCA   1434

BSNT_01724___   1438 TTCTTTATCTCGAGCATAATAGATGAAGACGGAGAAACAATAGCCGATCA   1487
                     ||.|||||...||.|||.|..||.||||||||||||||..||.|||..|.
RBAM_010340__   1435 TTTTTTATAGAGAACATCACGGACGAAGACGGAGAAACGTTATCCGGGCC   1484

BSNT_01724___   1488 TAAAGA--GGAAGGAAAGCGGGTTTTCAGCAAGCAGACGTCTTGGAATAT   1535
                     ||||.|  |.||  ||.|||.||.||||||...||||||.|.||||||||
RBAM_010340__   1485 TAAAAACGGCAA--AACGCGCGTCTTCAGCGGACAGACGGCATGGAATAT   1532

BSNT_01724___   1536 GACGAGAATGCTGCAGCAGGTAGTCAAAAAGGGAACGGC--CACGTCCGG   1583
                     ||||||||||||.||||||||.||.|||.|.|||||.||  |||  ..||
RBAM_010340__   1533 GACGAGAATGCTTCAGCAGGTCGTAAAAGAAGGAACCGCTTCAC--AAGG   1580

BSNT_01724___   1584 CGCCTATCACGGCGACCTGGCGGGAAAAACAGGTTCTACATCTTATACAG   1633
                     |..||||||.||.|||||||||||.|||||.||..|.||..|.|.|.|.|
RBAM_010340__   1581 CAGCTATCAAGGTGACCTGGCGGGGAAAACCGGCACGACCACATTTCCCG   1630

BSNT_01724___   1634 GCGTCTCCGGCGCGACAAAGGACGCTTGGTTTGCAGGCTATACGCCGAAA   1683
                     ||.||.|||||||||||||||||||.||||||||.||.||.||.||...|
RBAM_010340__   1631 GCATCCCCGGCGCGACAAAGGACGCCTGGTTTGCGGGATACACTCCCGGA   1680

BSNT_01724___   1684 ATAACCGGGGCAGTCTGGATGGGCTATGACAAAACGGATCAAAACCATTA   1733
                     .|.||.||.||.|||||||||||||||||||||||||||.|||.||||||
RBAM_010340__   1681 CTGACGGGAGCCGTCTGGATGGGCTATGACAAAACGGATAAAACCCATTA   1730

BSNT_01724___   1734 TTTGAAAGCCGGGAGCTCATACCCGACGCGGCTGTTTAAGGATATTTTGA   1783
                     ..||||||.|||.|||..|||||||....|.||.|||||.|.|||..|.|
RBAM_010340__   1731 CCTGAAAGGCGGAAGCCAATACCCGGTCAGACTCTTTAAAGCTATCGTTA   1780

BSNT_01724___   1784 CACAGGCAGGAGAAA----CCGGTCATGTGTTCACAAAGCCTAAAAACAT   1829
                     ||.|.||.||.||||    ||||.||    ||||.|||||||.||||..|
RBAM_010340__   1781 CAAAAGCGGGTGAAAACGGCCGGACA----TTCAAAAAGCCTGAAAATGT   1826

BSNT_01724___   1830 TAAAGACCTGGAAAGCCCGATTGAGTTGAAGCCGGTCAAAACACTCACAG   1879
                     .||.||.||||..||||||||||||.||.||.||||.||..|.||..|.|
RBAM_010340__   1827 GAAGGAACTGGGCAGCCCGATTGAGCTGGAGGCGGTAAAGTCCCTGTCGG   1876

BSNT_01724___   1880 CCGATTACACATTTAAAGCAGCGGGACTCTTTACTATTGAATTAAAGTGG   1929
                     ||..|||.||||||||.||...||||||..||||..||.|||||||.|||
RBAM_010340__   1877 CCCGTTATACATTTAAGGCGATGGGACTGATTACGGTTCAATTAAAATGG   1926

BSNT_01724___   1930 GACGCTCAAGAGGATGATCGGGCCGTATACAGAATTTATGTAAACAAGGA   1979
                     ||...||||.||||||||||||..||.|||.||||.||||..||.||.||
RBAM_010340__   1927 GATATTCAAAAGGATGATCGGGTTGTTTACCGAATATATGAGAAGAAAGA   1976

BSNT_01724___   1980 CGGCGAGGAGACGCTTCTTGATTCGGTTGAAGGGAAGGGAAGCTATGAAA   2029
                     |||..|.||.|.||||||.||||||||..||||.||.||.||||.|||.|
RBAM_010340__   1977 CGGAAAAGACAAGCTTCTGGATTCGGTGAAAGGAAAAGGCAGCTTTGACA   2026

BSNT_01724___   2030 TTCCTTATGCCAACTTATTTTCGGGCGCGTCTTATAAAATTGTGCCTTAT   2079
                     |.||.||||||||..|.|||||.||.||.||.||.|||.|.||.||.|||
RBAM_010340__   2027 TACCGTATGCCAATCTGTTTTCAGGGGCTTCATACAAAGTCGTTCCATAT   2076

BSNT_01724___   2080 AATACACAGACAAAAAGAGAAGGGGAAGGAACCGATTACGTTCAGCCAAA   2129
                     |||.|||||||..|...||||||.||.|||||.||.|||||||||||.||
RBAM_010340__   2077 AATTCACAGACGGATCAAGAAGGAGAGGGAACGGAATACGTTCAGCCGAA   2126

BSNT_01724___   2130 ATTGTTTTCCTCTTAA   2145
                     ..|.|||||.||||||
RBAM_010340__   2127 GCTTTTTTCTTCTTAA   2142


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