Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01755 and RBAM_010510
See
Amino acid alignment /
Visit
BSNT_01755 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_01755.1.9828.seq
# -bsequence dna-align/RBAM_010510___yhfQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01755-RBAM_010510___yhfQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01755-RBAM_010510___yhfQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01755
# 2: RBAM_010510___yhfQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1008
# Identity: 529/1008 (52.5%)
# Similarity: 529/1008 (52.5%)
# Gaps: 297/1008 (29.5%)
# Score: 1473.0
#
#
#=======================================
BSNT_01755 0 -------------------------------------------------- 0
RBAM_010510__ 1 ATGAAACAAATTTTCAGTATGCTGATGATCTTATCCGTTCTCTTCATAAC 50
BSNT_01755 0 -------------------------------------------------- 0
RBAM_010510__ 51 GGCATGCTCAGAACAGGAACATGAAACCGCCGTCAGGCACGATCTGGGGA 100
BSNT_01755 1 --------GTGCCTGAGCATCCGAAGCGGGTTGTTGTTCTTG-AGCTTGG 41
|||.|||.|||.|||.||||.||||..| |.||| |.|..||
RBAM_010510__ 101 CGGCGCATGTGGCTGCGCACCCGCAGCGCGTTGCCG-TGTTGAATCCGGG 149
BSNT_01755 42 TTTTATTGATACACTGCTTGATCTCGGCATTACGCCTGTCGGGGTTGCCG 91
.||||.|||||..||.|.||||||||||||.|.|||||| ||.|||.|
RBAM_010510__ 150 CTTTAATGATATTCTCCATGATCTCGGCATAAAGCCTGT---GGCTGCGG 196
BSNT_01755 92 ATGACA-----ACAAAGCGAAGCAGCTGATCAACAAGGATGTGCTGAAGA 136
..||.| |||.||||||.|
RBAM_010510__ 197 CGGATAATCGGACAGAGCGAAAC--------------------------- 219
BSNT_01755 137 AAATTGACGGCTACACATCTGTCGG--CACTCGCTCACAGCCAAGCATGC 184
||||||....|.|||||||| ||| || |||||.||.....||.
RBAM_010510__ 220 -----GACGGCAGTCCGTCTGTCGGACCAC-CG-TCACACCCTGATTTGA 262
BSNT_01755 185 AAAAGATTGCTTCATTAAAACCCGATTTAATTATTGCTGACACGACCCGG 234
|||||||..||||.|||||.||||||.|.||.|||||.|||.|.|.||..
RBAM_010510__ 263 AAAAGATCACTTCGTTAAAGCCCGATCTCATCATTGCAGACTCAAGCCTT 312
BSNT_01755 235 CATAAGAAGGTGTA-CGATCAGCTGAAAAAAATAGCGCCGACGATTGCGC 283
||.|||..|.|.|| ||| ||.||||.|||.||.||.|||||.|| |||
RBAM_010510__ 313 CACAAGGGGATATACCGA-CAACTGACAAAGATCGCTCCGACAAT--CGC 359
BSNT_01755 284 TT--AATAATTTAAATGCTGATTATCAGGATACAATTGACGCTTCGCTTA 331
|| ||.|||..|..|||.||||||||||||.|..||||.|||.|.||||
RBAM_010510__ 360 TTTAAAGAATGAAGCTGCGGATTATCAGGATGCGGTTGATGCTGCCCTTA 409
BSNT_01755 332 CGATTGCAAAAGCAGTCGGCAAGGAGAAGGAA--ATGGAGAAAAAGCTGA 379
|.||||.|||.||.|||||.|| |||.||.| ||.||||||.|..||.
RBAM_010510__ 410 CTATTGAAAAGGCGGTCGGTAA--AGATGGCATCATAGAGAAACAATTGT 457
BSNT_01755 380 TGGCGCATGAAGAAAAGCTTAGCGAGA-CAAAGCAGAAA-----AT---- 419
.|||.||.|||||||||||.|..||.| |||| ||||| ||
RBAM_010510__ 458 CGGCTCAGGAAGAAAAGCTGAATGACATCAAA--AGAAAGCTGGATGCAG 505
BSNT_01755 420 ----CAGCGCGAACAGCCAGTCCGTGCTTTTGAT-------CGGAAATAC 458
|.||.||| |||.|| || .|.|
RBAM_010510__ 506 AAGGCGGCACGA----------------TTTTATTAATTGACG---CTGC 536
BSNT_01755 459 AAATGATACGATTATGGCCAGGGATGAAAACTTCTTTACATCGAGACTTT 508
||||||.|..|||...|..|.||||||..|.||.|||||.||..|.||||
RBAM_010510__ 537 AAATGACAGCATTTCCGTAAAGGATGATCAGTTTTTTACGTCCCGGCTTT 586
BSNT_01755 509 TAA----CACAGGTCGGCTATCGATATGCAATCAGTACATCAGGCAATAG 554
|.| |.|||| |..||.| |||||..|| ||| |.
RBAM_010510__ 587 TGACGCTCGCAGG--GTTTACC--TATGCGGTC-------CAG-----AC 620
BSNT_01755 555 CGATTCAAGCAATGGCGG------CGACTCTGTGAATATGAAAATGAC-A 597
.||||| .||||| .||||| |||.|||||||| .
RBAM_010510__ 621 GGATTC------CGGCGGGAAATCAGACTC------TATCAAAATGACGT 658
BSNT_01755 598 CTGGAGCAGCTGCTGAAAACAGATCCGGATGTGATCATCCTGAT-GAC-- 644
|.||| |||||..||.|.||.|||||.|||...|||.|.|||.| |||
RBAM_010510__ 659 CCGGA-CAGCTTTTGCATACCGATCCTGATTACATCGTGCTGTTGGACGG 707
BSNT_01755 645 --AGGAAAAACAGATGACCTCGACGCCGACGTTAAACGCCCGATCGAAAA 692
||.||.||| |||||||
RBAM_010510__ 708 TGAGAAAGAAC--------------------------------TCGAAAA 725
BSNT_01755 693 GAATGTCCTTTGGAAAAAGCTGAAGGCAGTGAAAAACGGGCATGTATACC 742
.|||..|||.||||||.||||||..||.||.||||||||.||.||.||||
RBAM_010510__ 726 AAATCACCTCTGGAAACAGCTGACAGCTGTAAAAAACGGACACGTTTACC 775
BSNT_01755 743 ACGTGGACCGTGCGGTATGGTCTTTGCGCCGCAGTGTAGACGGGGCGAAT 792
.||.||||.|.|||||||||.|...||||||.||..|.|||||.|||.|.
RBAM_010510__ 776 GCGCGGACAGGGCGGTATGGACGGAGCGCCGGAGCATTGACGGAGCGGAC 825
BSNT_01755 793 GCCATTTTGGACGAGCTTCAAAAAGAGATGCCGGCT-GCTAAGAA----- 836
|||||.||..|.||.||.||.|||.|.|| ||| ||.||.||
RBAM_010510__ 826 GCCATATTACATGATCTGCAGAAAAAAAT----GCTCGCCAAAAAGGCCC 871
BSNT_01755 837 ATAA---- 840
|.||
RBAM_010510__ 872 AAAACTGA 879
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.