Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01759 and RBAM_010540

See Amino acid alignment / Visit BSNT_01759 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence dna-align/BSNT_01759___yhfT.1.9828.seq
#    -bsequence dna-align/RBAM_010540___yhfT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01759___yhfT-RBAM_010540___yhfT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01759___yhfT-RBAM_010540___yhfT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01759___yhfT
# 2: RBAM_010540___yhfT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1587
# Identity:     972/1587 (61.2%)
# Similarity:   972/1587 (61.2%)
# Gaps:         297/1587 (18.7%)
# Score: 2799.0
# 
#
#=======================================

BSNT_01759___      1 ATGACAATTAC-TCATACCTATTCATCTACTGCCGAAACATCGCCCGGCC     49
                     |||   ||||| |||| |.||||||..|||.||||.|..|.||||.|..|
RBAM_010540__      1 ATG---ATTACATCAT-CATATTCAGATACAGCCGGACAAGCGCCGGAAC     46

BSNT_01759___     50 GTGTAGCGATCCAGACTGAATCGGAGCAAATCACGTACCATGATTGGGAT     99
                     ...|.||.||.|||||.|||.|.||.||.|||||.||.||...||||.|.
RBAM_010540__     47 AGATCGCAATTCAGACAGAAACAGAACAGATCACCTATCAAACTTGGAAC     96

BSNT_01759___    100 CGGCTTGTCTCTCAAACCGCAAATTGGCT--GCGG----TCA---CAGCC    140
                     .||||.||....|||||||||||.|||||  ||.|    |||   .||||
RBAM_010540__     97 AGGCTGGTTAACCAAACCGCAAACTGGCTTGGCAGCCTTTCAGGTAAGCC    146

BSNT_01759___    141 G--------AGCA-------TGCCGAATCGTGTGGCGATCCTGC-TCCCA    174
                     |        .|||       |||||||             |.|| |||||
RBAM_010540__    147 GGAAAACATTGCAATATTACTGCCGAA-------------CGGCATCCCA    183

BSNT_01759___    175 AATAGTCTGGCGTTTTTACAGCTGTTTGCCGGAGCCACAGCG---GCTGG    221
                                 ||||||||.||.||.||.||.|   |.|||   ||.||
RBAM_010540__    184 ------------TTTTTACAACTTTTCGCAGGGG---CGGCGCATGCCGG    218

BSNT_01759___    222 ATGCACAGCCATTCCCATCGACACACGCT--GGAGCCCGGCTGAATGTAA    269
                     .|||||.||..||||..|.||..|.||||  |.||  ||||.|||.....
RBAM_010540__    219 CTGCACGGCGGTTCCGTTAGATCCCCGCTCGGCAG--CGGCGGAACTCGC    266

BSNT_01759___    270 GGAGCGGCTGTCCATAAGCAATGCGG--------ATCTTGTGGTTAC---    308
                     |||.|.||||..|||.|||||..|.|        ||||    ||.||   
RBAM_010540__    267 GGACCAGCTGCACATCAGCAAAACCGGCCTCGTCATCT----GTGACCGC    312

BSNT_01759___    309 ---TTTAGCCTTTTTCAAAAACAAACTGACAGATAG---CCAGACACCTG    352
                        .|.|||          ..||.||||   ||..|   |.|.||.||||
RBAM_010540__    313 CGGCTGAGC----------GGCAGACTG---GACGGCGTCAAAACGCCTG    349

BSNT_01759___    353 TTGTTTTGCTGGATAACTGTATGGCAGATATTT--------CTGAAGCAA    394
                     |..|..||..||||.|.|     ||||...|||        |.|||..||
RBAM_010540__    350 TCATCCTGTGGGATGAAT-----GCAGGCCTTTGATCGAGGCGGAAAAAA    394

BSNT_01759___    395 C------CGCTGATCCCTTGCCTACCATTGAT--------CCGGAGCACC    430
                     |      ||||                ||.||        ||||     |
RBAM_010540__    395 CGGAAGGCGCT----------------TTTATCAAAAACGCCGG-----C    423

BSNT_01759___    431 CT----TTTTATATGGGATTTACGTCGGGCTCGACAGGAAAACCGAAGGC    476
                     ||    |||||||..|||||.||.|||||.|||||.||.||.|||||.||
RBAM_010540__    424 CTGCCCTTTTATACCGGATTCACCTCGGGATCGACCGGTAAGCCGAAAGC    473

BSNT_01759___    477 CTTTACGCGATCTCACCGCTCATGGATAGAGAGCTTTACCTGTACAGAAA    526
                     |||.||.||.||||||||.||.|||.|.|||||||||.|.||||| ||||
RBAM_010540__    474 CTTCACCCGCTCTCACCGTTCGTGGCTGGAGAGCTTTTCTTGTAC-GAAA    522

BSNT_01759___    527 C-AGATTTTTCG--ATTTCATCAAATGACACGGTATTGATTCCCGGGACG    573
                     | .||  .||||  |||||..|..||||||..||..||.|.||.||.|||
RBAM_010540__    523 CGTGA--ATTCGGCATTTCCCCTGATGACAAAGTGCTGGTACCGGGCACG    570

BSNT_01759___    574 TTAATGTCCTCTCACTTCTTATACGGGGCAGTCAGCACTTTGTTTCTTGG    623
                     .|....||.||.|||||.||||||||.||.|||||||||||||||.|.||
RBAM_010540__    571 CTTCGCTCGTCACACTTTTTATACGGCGCCGTCAGCACTTTGTTTATCGG    620

BSNT_01759___    624 AGGAACCGT--TTGTTTGCTGAAAAAGTTTTC--TCCTGCCAAAGCGAAG    669
                     .||||||||  |..||....|||||    |||  .||.|||..|..|||.
RBAM_010540__    621 CGGAACCGTCATCCTTCAAAGAAAA----TTCAACCCGGCCGGAATGAAA    666

BSNT_01759___    670 GAATGGCTGTGCCGTGAATCCATCAG---------TGTTCTCTATACCGT    710
                     ||..|||               ||||         .|||||.||||||||
RBAM_010540__    667 GACCGGC---------------TCAGACAAGCTGACGTTCTATATACCGT    701

BSNT_01759___    711 ACCGACGATGACAGACGCC---CTCGCAAGGATTGAGGGTTTTCCCGACA    757
                     .|||||.|||||.||||||   |||.||   .|.||||..|||||.||.|
RBAM_010540__    702 TCCGACAATGACGGACGCCCTGCTCTCA---CTAGAGGCGTTTCCGGATA    748

BSNT_01759___    758 GTCCCGTCAAAATCATTTCATCCGGCGCAGACTGGCCGGCAGAATCCAAG    807
                     ..||..||||..|.|||||.|||||.|||||||||||.||....||.|| 
RBAM_010540__    749 CACCGCTCAAGGTGATTTCTTCCGGTGCAGACTGGCCCGCTTCGTCTAA-    797

BSNT_01759___    808 GAGAAGCTTGC--------CGCTGCATGGCCTCATCTCAAGCTGTACGAT    849
                      |.||||  ||        ||||  ||  ||.|||||...|.||||||||
RBAM_010540__    798 -ACAAGC--GCTGTCAGAGCGCT--AT--CCCCATCTGCGGTTGTACGAT    840

BSNT_01759___    850 TTTTACGGCACATCAGAGCTTAGTTTTGTGACGTTTTCTTCACCGGAAGA    899
                     ||||||||.||.||.|||||.|||||.|||.||||.|..||.||.|||||
RBAM_010540__    841 TTTTACGGAACGTCCGAGCTGAGTTTCGTGGCGTTCTTATCGCCTGAAGA    890

BSNT_01759___    900 CAGCAAACGGAAGCCGCATTCAGCGGGCCGCCCTTTTCATAATGTCCGGA    949
                     ||||...||.|||||..|..|.|||||||||||.|||.|.|||||....|
RBAM_010540__    891 CAGCGCCCGAAAGCCTGACGCGGCGGGCCGCCCGTTTGAAAATGTTACAA    940

BSNT_01759___    950 TCGAAATCCTCAACG--CTGGAGGAGAACGCTGCCAGCCAGGAGAAATCG    997
                     |||||||||.|  ||  |.||.||||||||||||..|||.||.||||..|
RBAM_010540__    941 TCGAAATCCGC--CGGCCCGGCGGAGAACGCTGCATGCCGGGCGAAACGG    988

BSNT_01759___    998 GAAAAATATTTGTCAAAAGCCCGATGAGGTTTTCCGGCTATGTGAACGGC   1047
                     |.||.||.|||||.||.||||||||||..||||||||.||..|.||||||
RBAM_010540__    989 GGAAGATTTTTGTGAACAGCCCGATGAAATTTTCCGGATACATCAACGGC   1038

BSNT_01759___   1048 AGC-ACACCAGATGA------ATGGATGACAGTAGATGATATGGGCTACG   1090
                      || |.|||.|||||      .||||||||.||.|||||.|||||.||..
RBAM_010540__   1039 -GCAAAACCTGATGATTCCGGCTGGATGACGGTTGATGACATGGGATATA   1087

BSNT_01759___   1091 TTGATGAAGAGGGCTTTCTATACATATC--AGGAAGAGAAAACGGGATGA   1138
                     |.|||...||.||||.|||.|  |||||  ||||.|.|||||||||||||
RBAM_010540__   1088 TCGATCGTGAAGGCTATCTTT--ATATCGAAGGACGTGAAAACGGGATGA   1135

BSNT_01759___   1139 TTGTGTACGGAGGATTAAATATTTTCCCAGAAGAAATTGAACGTGTGCTT   1188
                     |.||.|..||.||..|.|||.|.|||||||||||.||.|||||||||||.
RBAM_010540__   1136 TCGTATCAGGCGGCCTGAATGTATTCCCAGAAGAGATAGAACGTGTGCTC   1185

BSNT_01759___   1189 CTCGCCTGCCCAGAGGT-TGAAAGCGCGGCTGTCGTTGGCATTCCCGACG   1237
                     ..|..|||.||.|..|| .|||| .|||||.|||.|.||||||||.||.|
RBAM_010540__   1186 AACCGCTGTCCGGGCGTCAGAAA-AGCGGCCGTCATCGGCATTCCTGATG   1234

BSNT_01759___   1238 AGTATTGGGG-AGAAATCGCTGTAGCTGTCATTCTTGGAAACGCTAATGC   1286
                     |.|||||||| || .|||||.||.||.||.||....|||.|.||.||||.
RBAM_010540__   1235 ATTATTGGGGCAG-CATCGCCGTTGCGGTGATCGACGGACATGCAAATGT   1283

BSNT_01759___   1287 CA--GAACACTGAAAGCCTGGTGTAAACAGAAATT------AGC--CT--   1324
                     .|  ||  ||||||         .||||||    |      |||  ||  
RBAM_010540__   1284 AAAGGA--ACTGAA---------GAAACAG----TGCCGCGAGCAGCTGG   1318

BSNT_01759___   1325 ---CCTATAAAATTCCGAAAAAATGGGTGTTTGCAGACAGCTTGCCGGAA   1371
                        |.||||||||.||||||||||||.|||||.||||.|   |.||||||
RBAM_010540__   1319 CGGCATATAAAATCCCGAAAAAATGGCTGTTTTCAGAAA---TACCGGAA   1365

BSNT_01759___   1372 ACGAG-CAGCGGAAAAATTGCCCGTTCCAGAGTGAAAAA-----------   1409
                     || || |.|||||||.||.||||||.||...||..||||           
RBAM_010540__   1366 AC-AGCCGGCGGAAAGATCGCCCGTGCCGCCGTACAAAAGCAGGCAAAGG   1414

BSNT_01759___   1410 -----ATGG-CTGGAAGAGAGTGTACAGTATAAATGA   1440
                          |||| .||||||   .||||.           
RBAM_010540__   1415 ACATGATGGAATGGAAG---CTGTAA-----------   1437


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