Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01772 and RBAM_010650

See Amino acid alignment / Visit BSNT_01772 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_01772___yhjA.1.9828.seq
#    -bsequence dna-align/RBAM_010650___yhjA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01772___yhjA-RBAM_010650___yhjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01772___yhjA-RBAM_010650___yhjA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01772___yhjA
# 2: RBAM_010650___yhjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 281
# Identity:     204/281 (72.6%)
# Similarity:   204/281 (72.6%)
# Gaps:          22/281 ( 7.8%)
# Score: 705.0
# 
#
#=======================================

BSNT_01772___      1 ATGAAAAAAGCGGTGGCGGT--TTTGCTGTCACTCGGTCTCGTTTTCGGT     48
                     ||||||||..|||..||.||  |||  ||||..|||||||.||.|||||.
RBAM_010650__      1 ATGAAAAAGACGGCAGCTGTGCTTT--TGTCTTTCGGTCTTGTGTTCGGA     48

BSNT_01772___     49 TTTTCATACGGAGCTGACCATGTGGCGGAAGCCAAAACAAAGGTGAAGGT     98
                     |.||||||||||||.|..||...|||.|||||.||||||||||||||...
RBAM_010650__     49 TGTTCATACGGAGCGGGGCAGACGGCAGAAGCGAAAACAAAGGTGAAAAC     98

BSNT_01772___     99 CTATAAGAACTGCAAGGAGTTAAACAAAGTATACAAAGGCGGAGTGGCC-    147
                     .|||.|.||||||||||.|.|.||.||.||.||.||.|||||.|||||| 
RBAM_010650__     99 GTATCAAAACTGCAAGGCGCTGAATAAGGTGTATAAGGGCGGCGTGGCCA    148

BSNT_01772___    148 ---CGCACTTCGAAGGCGAAAAACAAAGGCGGAAAAACAAAGTACAAGCC    194
                        ||    |||||.|.|||||||||.|||||.|.||||||||||||.||
RBAM_010650__    149 AATCG----TCGAAAGTGAAAAACAAGGGCGGCAGAACAAAGTACAAACC    194

BSNT_01772___    195 TTACGTCTCTAAGGACCTTTATGATGCCAATAAAA-ACAAAGACCGCGAT    243
                     .||.||.||.||.|..|||||..||||.||||||| || ..|||||.|||
RBAM_010650__    195 GTATGTATCAAAAGCGCTTTACAATGCAAATAAAAGAC-TTGACCGAGAT    243

BSNT_01772___    244 AAAGATCT-TATCGCCTGTGAACGGTAA---    270
                     ||||| || ||||||.|||||   |.||   
RBAM_010650__    244 AAAGA-CTATATCGCATGTGA---GAAATAA    270


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