Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01807 and RBAM_010770

See Amino acid alignment / Visit BSNT_01807 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:30
# Commandline: needle
#    -asequence dna-align/BSNT_01807___yhjR.1.9828.seq
#    -bsequence dna-align/RBAM_010770___yhjR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01807___yhjR-RBAM_010770___yhjR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01807___yhjR-RBAM_010770___yhjR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01807___yhjR
# 2: RBAM_010770___yhjR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity:     288/552 (52.2%)
# Similarity:   288/552 (52.2%)
# Gaps:         156/552 (28.3%)
# Score: 761.5
# 
#
#=======================================

BSNT_01807___      1 ---------------TTGCATTACAGCTACTATCCCTATCCGGTGCCATA     35
                                    ||.|||||    |||  |.||| ||        |.
RBAM_010770__      1 ATGCACGAGAATTTTTTTCATTA----TAC--TGCCT-TC--------TG     35

BSNT_01807___     36 CAGGGAAGATCCTGTTTTGATTCGAA--ATTTGCAGAAGGCCATCAACGG     83
                     |||.||.|||.||||..|.||  .||  ||.||...||..||||.|||||
RBAM_010770__     36 CAGTGACGATTCTGTGCTTAT--CAAGGATCTGGTAAAATCCATAAACGG     83

BSNT_01807___     84 AGAATTCAG----------TGCCATTCAATGCTA-CCGCAAGCTCGCCGA    122
                     .||||.|||          |||.|.|||||..|| |||.||...||||||
RBAM_010770__     84 CGAATACAGCGCTGTGATTTGCTACTCAATATTAGCCGAAAAAGCGCCGA    133

BSNT_01807___    123 ACTCGCCCACAGCGATGAGGTCAGAAAACAGATTGAAGAAATCAG-GCGT    171
                           ||.||     ||..||||||.||..||.|||.|.||||| |.| 
RBAM_010770__    134 ------CCGCA-----GAAATCAGAAGACGAATCGAACATATCAGAGAG-    171

BSNT_01807___    172 GACGAGATTCGCCACCTCCGTGAATTTTCCACACTGTATGGTTCAATTAC    221
                     ||.||..|.||||||||.|..|..||.||..||||||||...||||||||
RBAM_010770__    172 GAAGAAGTGCGCCACCTGCACGCTTTCTCTTCACTGTATACGTCAATTAC    221

BSNT_01807___    222 CGGCAAACACATCATGCCGAAACAAACGGAAGAATGCCCGGACAATTTCA    271
                     |||.|||||..|.|.|||||||||.|||||..|.||.|||.|||..|.||
RBAM_010770__    222 CGGAAAACAGTTGACGCCGAAACAGACGGAGCATTGTCCGCACACATACA    271

BSNT_01807___    272 CAAGAGGATTGGACGCCGCTTTTAAAGATGAACAAGAAACCG--TCGACT    319
                     .|..||||.||...||.||.|||.|.|||||.| |||||.||  | ||.|
RBAM_010770__    272 GAGAAGGACTGAGGGCGGCGTTTTATGATGAGC-AGAAAACGAAT-GATT    319

BSNT_01807___    320 TTTACTTGCGTGCGGCCGA---------GGAAACGTCAAACTTAAAAGCG    360
                     ||||.||||..||..||||         |.|..||         .|||||
RBAM_010770__    320 TTTATTTGCAGGCATCCGATAGAGCGGTGCATCCG---------GAAGCG    360

BSNT_01807___    361 AAAGGCG--TCTTTACGCGCGCAGCACGTGATGAACAAAATCACGCTGTC    408
                     ||  |||  |.|||.|.|||.|.|||..|||.|||||...|||.||.|||
RBAM_010770__    361 AA--GCGGTTATTTGCCCGCACGGCATTTGACGAACAGCGTCATGCCGTC    408

BSNT_01807___    409 TGGTTCCTATACTATCTG-------------------AT------GGAAC    433
                     |||||..|||||.||.||                   ||      |||||
RBAM_010770__    409 TGGTTTTTATACGATATGGCCCACTCTCCTTTCCACCATACAGGGGGAAC    458

BSNT_01807___    434 GTTAG---------------------------------------------    438
                     |.||.                                             
RBAM_010770__    459 GGTATCAAACGCGCCGAACACAAGCTACACCGAGGTGAATACCGGCAAAT    508

BSNT_01807___    438 --    438
                       
RBAM_010770__    509 AA    510


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