Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_00961 and RBAM_010780

See Amino acid alignment / Visit BSNT_00961 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence dna-align/BSNT_00961___ydfS.1.9828.seq
#    -bsequence dna-align/RBAM_010780___ydfS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00961___ydfS-RBAM_010780___ydfS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00961___ydfS-RBAM_010780___ydfS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00961___ydfS
# 2: RBAM_010780___ydfS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 784
# Identity:     475/784 (60.6%)
# Similarity:   475/784 (60.6%)
# Gaps:         146/784 (18.6%)
# Score: 1194.0
# 
#
#=======================================

BSNT_00961___      1 ATGAT---TGAA---CTTGAAGTTGTCATTAGAACGGTTGCCAGCTTTG-     43
                     |||||   .|||   |..|||||    |.|.|.|||   |.|.|||.|| 
RBAM_010780__      1 ATGATGTCAGAATATCCCGAAGT----AATTGTACG---GACGGCTCTGT     43

BSNT_00961___     44 ------GCTTGCTGTTAATCGCAGAACGAATTTTAGGCAAACAGACAATC     87
                           ||.|.|||||.||||..|..||.||..|.||.|||||.||.||.
RBAM_010780__     44 CGTTCAGCATTCTGTTTATCGGCGCCCGGATACTCGGTAAACAAACCATT     93

BSNT_00961___     88 TCTCAAATGACGATTTTTGATTTTATTGCGGCGATCACACTAGG------    131
                     ||.||.||||||.||||||||||.||||||||.|||.|.||.||      
RBAM_010780__     94 TCACAGATGACGCTTTTTGATTTCATTGCGGCCATCTCGCTCGGCGCTAT    143

BSNT_00961___    132 ---GGCGATTGCTGCCGGATTAGCTTACAATACTTCAATAAAA-----CC    173
                        |||.|.| |||.||                ||.||||.||     ||
RBAM_010780__    144 CACGGCAAAT-CTGTCG----------------TTTAATACAAAGCTGCC    176

BSNT_00961___    174 G---CATAAT-ATGGCCATTTCGTTTAGTATTTTTGTGCTAACCATTTTT    219
                     |   |||.|| || |.||||.|.|..|.||||||.|||..||.|||||..
RBAM_010780__    177 GATTCATTATCAT-GTCATTGCCTACATTATTTTCGTGGCAATCATTTAC    225

BSNT_00961___    220 CTAATTTCG--TTCCTGTCGATAAAGAACAGGAAGCTGAGGAAATTTTTT    267
                     ||  |.|||  |..||.||.||.||.||||||...||||||...||.|||
RBAM_010780__    226 CT--TGTCGCATATCTTTCTATGAAAAACAGGGTCCTGAGGGGTTTCTTT    273

BSNT_00961___    268 GCCGGAGATCCTACAGTGCTGATTCAAAACGGGAAGATACTTGA--ATCA    315
                     ||.||..|.||.||..|..|.|||||||||||.||.||||||||  ||  
RBAM_010780__    274 GCAGGCAAACCGACCATTATCATTCAAAACGGTAAAATACTTGAGCAT--    321

BSNT_00961___    316 AATATGAGGAAA--ATGCGTTACACACTTGATTATTTAAATCAGCAATTA    363
                     |||||||  |||  ||||||||.||..|.||.||.||.||.|||||..|.
RBAM_010780__    322 AATATGA--AAACGATGCGTTATACCATCGACTACTTGAACCAGCAGCTG    369

BSNT_00961___    364 CGGGAAAAAGAAATATTT--AATATCGAAGAAGTTCTTTTTGCCATTCTT    411
                     ||.|.|||.||..|||||  .||.||..||  ||||....||||||..||
RBAM_010780__    370 CGTGTAAATGACGTATTTGACATTTCTCAG--GTTCAGACTGCCATCATT    417

BSNT_00961___    412 GAAACGAATGGTCAGC-TGACTGTGTTAAGA----AAACCGCAATTCCGG    456
                     |||||.||.|| |||| ||.|.|||    ||    ||||||.||||...|
RBAM_010780__    418 GAAACAAACGG-CAGCATGTCAGTG----GAGGTCAAACCGGAATTTGCG    462

BSNT_00961___    457 CATGTGACCAAACAGGATTT---AATGATTGCGG----TAAACCAAGAAC    499
                     |..||.||.|.|.|||||.|   .||..||||.|    |.||  ||||| 
RBAM_010780__    463 CCCGTTACAAGAAAGGATCTCGGCATCTTTGCCGGACATGAA--AAGAA-    509

BSNT_00961___    500 ACAGGCTT--CCGATAGAGCTTATTATGGACGG--------------AGA    533
                          |||  ||| |.|||||.|||||||||||              || 
RBAM_010780__    510 -----CTTTGCCG-TTGAGCTGATTATGGACGGCCGGCTGGTGATGAAG-    552

BSNT_00961___    534 AATCATTGAGAATAATTTAAAGCAGAATCGTTTGACGGAATCCTGGCTTT    583
                     ||||  || |||.|    |||.||    |||.|  |||||...|||||  
RBAM_010780__    553 AATC--TG-GAAGA----AAACCA----CGTAT--CGGAAAAATGGCT--    587

BSNT_00961___    584 TGGAG----GAATTGCGA-AAAAGAGACATAAAGGTGAAAGAGACCGTGT    628
                       |||    |||||| || |..|||.||.|.||...|.||||...|||.|
RBAM_010780__    588 --GAGAGAAGAATTG-GACACGAGAAACCTCAAACCGGAAGACGTCGTAT    634

BSNT_00961___    629 ACGCAGTGCTGCTGG--GTAATGGAGATATTTATGTGGATCA-ATATAAA    675
                     ||||.|||| || ||  |.||.||.....|||.|||.|| || |||..|.
RBAM_010780__    635 ACGCTGTGC-GC-GGAAGCAACGGCCGGCTTTTTGTCGA-CACATACGAC    681

BSNT_00961___    676 GACCATATATCAGTC-CCTATGGATAAGGAATGA    708
                     ||||||||..|| || |||.|.|||.|.||||.|
RBAM_010780__    682 GACCATATTACA-TCGCCTCTAGATCAAGAATAA    714


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00961 and RBAM_010780

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
