Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01829 and RBAM_010900

See Amino acid alignment / Visit BSNT_01829 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:33
# Commandline: needle
#    -asequence dna-align/BSNT_01829___yisI.1.9828.seq
#    -bsequence dna-align/RBAM_010900___yisI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01829___yisI-RBAM_010900___yisI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01829___yisI-RBAM_010900___yisI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01829___yisI
# 2: RBAM_010900___yisI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 230
# Identity:     118/230 (51.3%)
# Similarity:   118/230 (51.3%)
# Gaps:          73/230 (31.7%)
# Score: 293.5
# 
#
#=======================================

BSNT_01829___      1 ATGAACAGTAAAATTGAAGAAATGAGGATCACACTAATTGAAACCGCACA     50
                     ||||||   |||||||||||||..||..|.||..||.|.||.||.||.||
RBAM_010900__      1 ATGAAC---AAAATTGAAGAAAAAAGATTAACTTTATTCGAGACAGCGCA     47

BSNT_01829___     51 AAAATACGGCATGAATTCAAAAGAAACGATTCA-ATGCAGCCAAGAGCTG     99
                     |||||.|||.||.|||.|||..||.||.| ||| .||||||||.||||||
RBAM_010900__     48 AAAATTCGGAATCAATGCAACGGAGACCA-TCAGGTGCAGCCAGGAGCTG     96

BSNT_01829___    100 GATATCCTGCTGAA----TACCCGG--------ATTAAAGAA--GAAA--    133
                     ||.|.|||..|.||    |.||.||        ||..||.||  ||||  
RBAM_010900__     97 GACAGCCTTTTAAACGGGTGCCGGGGCGGGCTCATCCAACAAACGAAAGA    146

BSNT_01829___    134 --------TGATTTTTG----GG------AGATATCTTGAAAACTCCCGT    165
                             |||          ||      |||    ||||..||..|||.
RBAM_010900__    147 CAGCGGGCTGA------ACCCGGCCGCACAGA----TTGAGCACGGCCGC    186

BSNT_01829___    166 A----TGTAA--------------------    171
                     |    .|.||                    
RBAM_010900__    187 ACCGCAGGAAAAAAAGAGGCTTTCTCATAA    216


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