Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01839 and RBAM_010950

See Amino acid alignment / Visit BSNT_01839 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:34
# Commandline: needle
#    -asequence dna-align/BSNT_01839___asnO.1.9828.seq
#    -bsequence dna-align/RBAM_010950___asnO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01839___asnO-RBAM_010950___asnO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01839___asnO-RBAM_010950___asnO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01839___asnO
# 2: RBAM_010950___asnO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1867
# Identity:    1454/1867 (77.9%)
# Similarity:  1454/1867 (77.9%)
# Gaps:          47/1867 ( 2.5%)
# Score: 5602.0
# 
#
#=======================================

BSNT_01839___      1 ATGTGTGGAATTACGGGTTGGGTCGATTTTAAAAAGCAGCTCGTCCAGGA     50
                     ||||||||||||.|||||||||||||||||.||||||||||||||||.||
RBAM_010950__      1 ATGTGTGGAATTGCGGGTTGGGTCGATTTTCAAAAGCAGCTCGTCCAAGA     50

BSNT_01839___     51 AAAACAAACGATGGACAGAATGACAGACACTCTTTCCAAACGAGGGCCTG    100
                     .|||||.|..|||.|||..||||.||||||||||||.|||||||||||||
RBAM_010950__     51 GAAACATATTATGAACAATATGATAGACACTCTTTCAAAACGAGGGCCTG    100

BSNT_01839___    101 ATGATTCAAACGTTTGGGGGGAGCACCATGTTTTATTCGGACATAAAAGA    150
                     |||||||||||||.|||||.||||.|||||||||||||||||||||||||
RBAM_010950__    101 ATGATTCAAACGTCTGGGGAGAGCCCCATGTTTTATTCGGACATAAAAGA    150

BSNT_01839___    151 CTTGCAGTTGTTGATATTGAAGGAGGACGCCAGCCGATGGCGTGTACCTA    200
                     |||.|.||.|||||.||||||||.||.||||||||||||||.||.||..|
RBAM_010950__    151 CTTTCGGTCGTTGACATTGAAGGCGGCCGCCAGCCGATGGCCTGCACGCA    200

BSNT_01839___    201 TAAAGGGGATACGTACACCATTATTTACAATGGCGAGCTGTATAACACGG    250
                     |.|||.|||.|||||||||||.|||||.||||||||||||||||||||||
RBAM_010950__    201 TCAAGAGGAAACGTACACCATCATTTATAATGGCGAGCTGTATAACACGG    250

BSNT_01839___    251 AAGATTTGCGCAAAGAATTGCGGGCGCGGGGCCATCAATTCGAGCGTACG    300
                     |.||.|||||.||.||..|.|.||||.|||||||.|..||.|||.|.||.
RBAM_010950__    251 AGGAATTGCGGAAGGAGCTTCAGGCGAGGGGCCACCGTTTTGAGAGGACC    300

BSNT_01839___    301 TCAGATACCGAGGTGCTTCTGCACAGCTACATCGAGTGGCAGGAAGACTG    350
                     ||.|||||.||.|||||.|||||||||||.||.|||||||.|||.||.||
RBAM_010950__    301 TCTGATACTGAAGTGCTGCTGCACAGCTATATTGAGTGGCGGGAGGAGTG    350

BSNT_01839___    351 TGTCGACCATCTCAATGGCATATTCGCTTTCGCTGTGTGGGATGAAAAGC    400
                     .||.||||...|.||.||.||.||||||||.||..|.|||||||||||||
RBAM_010950__    351 CGTGGACCGCTTGAACGGTATTTTCGCTTTTGCCATCTGGGATGAAAAGC    400

BSNT_01839___    401 GTAATCTGCTGTTTGCCGCGAGAGACCGTCTCGGTGTAAAGCCGTTTTTT    450
                     |.||.|.||||||.|..||.||||||||.|||||.||.||.|||||||||
RBAM_010950__    401 GCAAGCGGCTGTTCGGGGCAAGAGACCGGCTCGGCGTCAAACCGTTTTTT    450

BSNT_01839___    451 TACACGAAGGAA---GGCTCTTCATTTCTCTTCGGGTCGGAAATCAAAGC    497
                     ||   .||.|||   ||||||||.|||||.||.|||||||||.|.|||||
RBAM_010950__    451 TA---TAAAGAACACGGCTCTTCCTTTCTGTTTGGGTCGGAATTGAAAGC    497

BSNT_01839___    498 AATCCTCGCGCACCCTGATATAAAAGCGCGAGTGGACAGAACG--GGACT    545
                     .|||||.||.||.||||||.|.|||||.||....|||||  ||  |||||
RBAM_010950__    498 CATCCTTGCTCATCCTGATGTGAAAGCCCGCACAGACAG--CGGCGGACT    545

BSNT_01839___    546 TTCTGAAATTTTCGGTCTTGGACCGTCCAGAACCCCGGGCACTGGCATAT    595
                     |.|.|||.|.|||||.||.||.|||||||||||.||||||...||..|.|
RBAM_010950__    546 TGCGGAAGTATTCGGACTCGGGCCGTCCAGAACTCCGGGCTGCGGAGTGT    595

BSNT_01839___    596 TTAAAGGTATAAAAGAAATCCGCCCGGCTCATGCGCTGACATTTTCCAAA    645
                     |||||||.||..|.||..|.||.||.||.||||||.|.||.||.||.||.
RBAM_010950__    596 TTAAAGGAATCCACGAGGTGCGTCCCGCCCATGCGTTCACTTTCTCAAAG    645

BSNT_01839___    646 GACGGACTTAAT--ATTTGGCGTTATTGGAATGTTGAAAGCGAAAAACAT    693
                     |||||  ||..|  ||.|||||||||||||||||..|.||||||||.|||
RBAM_010950__    646 GACGG--TTTGTCCATATGGCGTTATTGGAATGTAAAGAGCGAAAAGCAT    693

BSNT_01839___    694 ACGGACAGTTTTGATGACACGGTTGCCAATGTCAGA-TCG----TTATTT    738
                     ||.|||||.||.|||||.||.|..||     |||.| |||    ||||||
RBAM_010950__    694 ACAGACAGCTTGGATGAAACCGCGGC-----TCACATTCGGTACTTATTT    738

BSNT_01839___    739 CAGGACGCGGTGACGCGGCAGCTTGTGTCGGATGTGCCTGTTTGCACATT    788
                     |||||.||.|||||.||.|||||.||.||.||.|||||.||||||||.||
RBAM_010950__    739 CAGGATGCAGTGACACGCCAGCTCGTATCTGACGTGCCGGTTTGCACGTT    788

BSNT_01839___    789 CCTATCAGGCGGTCTGGACTCAAGCGCAATTACAGCGATTGCGGCGGGCC    838
                     ..|||||||.||.||.||.||.|||||.||.||.|||||.||.||.|..|
RBAM_010950__    789 TTTATCAGGGGGGCTTGATTCGAGCGCGATAACCGCGATAGCCGCCGCTC    838

BSNT_01839___    839 ATTTTGAAAAGGAAGGAAAAGCACCGCTTCATACTTATTCGATTGATTAC    888
                     |||||||.||..||||.|.||..||.||||||||||||||.||||||||.
RBAM_010950__    839 ATTTTGAGAAACAAGGCAGAGATCCCCTTCATACTTATTCAATTGATTAT    888

BSNT_01839___    889 GAAGAGAACGATAAATTTTTTCAAGCAAGCGCTTTTCAGCCGAATGATGA    938
                     ||.||||||...|||||||||.||||.|||||.|||||||||||||||||
RBAM_010950__    889 GAGGAGAACAGCAAATTTTTTAAAGCGAGCGCCTTTCAGCCGAATGATGA    938

BSNT_01839___    939 CGGACCATGGATTGAAAAAATGACAGAGGCTTTCGGCACAACGCACCACA    988
                     |||.||.|||||.||.|||||||||.|.||.|||||||||..|||.||.|
RBAM_010950__    939 CGGCCCGTGGATCGATAAAATGACAAATGCATTCGGCACACAGCATCATA    988

BSNT_01839___    989 AATGCGTCATCA-GCCAAAAAGAT---CTCATTGATCATTTGGAGGAAGC   1034
                     |.|||||.||.| ||    |.|||   ||..||||.|||.||||||||.|
RBAM_010950__    989 AGTGCGTGATTACGC----AGGATCAGCTGGTTGAACATCTGGAGGAATC   1034

BSNT_01839___   1035 TGTACTGGTCAAAGACTTGCCGGGAATGGCGGATGTCGACTCATCCCTGC   1084
                     .||.||.||||.||||.|||||||.|||||.|||||.||.||.||.||..
RBAM_010950__   1035 CGTTCTCGTCAGAGACCTGCCGGGCATGGCTGATGTTGATTCCTCGCTAT   1084

BSNT_01839___   1085 TGTGGTTTTGCCGGGAAATCAAAAAGGACTTTGTCGTCAGCCTATCGGGA   1134
                     |.|||||.|||||||||||.|||||.||.||||||||.|||||.||.|||
RBAM_010950__   1085 TATGGTTCTGCCGGGAAATTAAAAAAGATTTTGTCGTGAGCCTTTCCGGA   1134

BSNT_01839___   1135 GAGTGCGCGGATGAGATTTTCGGCGGGTACCCGTGGTTCCATA---CGGC   1181
                     ||.||.|||||.||.|||||||||||.||.||||||||.||.|   ||||
RBAM_010950__   1135 GAATGTGCGGACGAAATTTTCGGCGGATATCCGTGGTTTCACACCGCGGC   1184

BSNT_01839___   1182 AGATGTTGAGTCTGGCTTTCCATGGATGAGATCAACGGAGGAGCGGATCA   1231
                     |||.|..||   .||.|||||.||||||||.||.||.||||||.||||||
RBAM_010950__   1185 AGAAGAAGA---CGGATTTCCTTGGATGAGGTCGACTGAGGAGAGGATCA   1231

BSNT_01839___   1232 AGCTGCTT-TCTGACTCATGGCAGAAAAAATTGAATCTGAAAGAATACGT   1280
                     .||| ||| ..|||....|||||.|||....|||||||.|.|||||||||
RBAM_010950__   1232 CGCT-CTTGGATGAAAAGTGGCAAAAACGGCTGAATCTTAGAGAATACGT   1280

BSNT_01839___   1281 AAATGCCAAATATGAAGAAACCTTGGCAGAAACGCCATTATTAGATGGTG   1330
                     .|||||.|.|||||||||||||.|.||.||||||||..|.|||||.||||
RBAM_010950__   1281 GAATGCGAGATATGAAGAAACCATTGCGGAAACGCCGCTGTTAGACGGTG   1330

BSNT_01839___   1331 AAACGGGTGTGGATAAAGCAAGAAGACAGCTGTTCTATTTAAATATGCTT   1380
                     |.|||||....||||||||.|||.|.||||||||.||.||||||||||||
RBAM_010950__   1331 AGACGGGAACAGATAAAGCGAGACGGCAGCTGTTTTACTTAAATATGCTT   1380

BSNT_01839___   1381 TGGTTTATGACGAACCTTTTGGATCGGAAGGATCGCATGAGCATGGGGGC   1430
                     |||||||||||.||.||..|.||.||.||.||.||.|||||||||||.||
RBAM_010950__   1381 TGGTTTATGACAAATCTGCTCGACCGCAAAGACCGAATGAGCATGGGCGC   1430

BSNT_01839___   1431 GAGCCTGGAAGTGCGGGTGCCGTTCGCCGATCACCGGCTTGTGGAATATG   1480
                     .||.||.|||||.|||||||||||||||||.|||.|.|||||||||||.|
RBAM_010950__   1431 AAGTCTTGAAGTACGGGTGCCGTTCGCCGACCACAGACTTGTGGAATACG   1480

BSNT_01839___   1481 TTTGGAATATTCCGTGGGAAATGAAAATGCATGATAATCGGGAAAAAGGC   1530
                     |||||||||||||.|||||||||||||||||||..|..||||||||||||
RBAM_010950__   1481 TTTGGAATATTCCTTGGGAAATGAAAATGCATGGCAGCCGGGAAAAAGGC   1530

BSNT_01839___   1531 ATTTTACGCAAAGCGCTTGAAGGTATTTTGCCTGATGACATTCTGTATCG   1580
                     ||.||.||.||||||||||||||..|..|.|||||.||.|||.||||.||
RBAM_010950__   1531 ATCTTGCGAAAAGCGCTTGAAGGACTGCTTCCTGAAGATATTTTGTACCG   1580

BSNT_01839___   1581 CAAAAAAAGCCCGTATCCGAAAACACATCATCCGGAATATACAAAAGGCG   1630
                     ||||||||||||.|||||||||||.|||||.|||.||||.||..|.||.|
RBAM_010950__   1581 CAAAAAAAGCCCTTATCCGAAAACGCATCACCCGAAATACACGCAGGGGG   1630

BSNT_01839___   1631 TCAGCGAATGGCTGAAAACGA--TCAGAAGCCAAAAGGACTCCGTGCTCC   1678
                     |||..||||||||||||||||  |.|.||  ||.||.||.||||||||.|
RBAM_010950__   1631 TCACAGAATGGCTGAAAACGATTTTACAA--CAGAAAGATTCCGTGCTTC   1678

BSNT_01839___   1679 ATACCTTGCTGGACAGAAAACAATTAGATCAGCTTTTAGAAACGGAAGGC   1728
                     |.|||.||||.||||||||..|..|.||...|||..|.||.||.|||||.
RBAM_010950__   1679 ACACCCTGCTTGACAGAAAGAAGCTGGAAATGCTGCTGGAGACAGAAGGT   1728

BSNT_01839___   1729 TCCTCCTTCAAGGTGCCGTGGTTCGGACAGCTCATGAAGGGACCTCAGCT   1778
                     ||.||.||..||||.|||||||||||.|||||.|||||.||.||.|||||
RBAM_010950__   1729 TCATCTTTTCAGGTCCCGTGGTTCGGCCAGCTGATGAAAGGCCCGCAGCT   1778

BSNT_01839___   1779 GATCGCCCATCTTGCTCAAATTCATACATGGTTTGAAGCGTATCGCATTG   1828
                     |||||||||||||||.||.||.||||||||||||||.|||||.||.||.|
RBAM_010950__   1779 GATCGCCCATCTTGCCCAGATCCATACATGGTTTGAGGCGTACCGTATCG   1828

BSNT_01839___   1829 ATATTGATGAAGGATAA   1845
                     ||||   .||||.||||
RBAM_010950__   1829 ATAT---AGAAGAATAA   1842


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