Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01844 and RBAM_010980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_01844___yisR.1.9828.seq
# -bsequence dna-align/RBAM_010980___yisR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01844___yisR-RBAM_010980___yisR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01844___yisR-RBAM_010980___yisR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01844___yisR
# 2: RBAM_010980___yisR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity: 660/908 (72.7%)
# Similarity: 660/908 (72.7%)
# Gaps: 88/908 ( 9.7%)
# Score: 2402.0
#
#
#=======================================
BSNT_01844___ 1 ATG-CCTCGCATCCTGTTTACAGTCCCGCCTTTTCCGGTATTTATCGCAG 49
||| |||..| ||..|||.|||||.||.||.||.|||||.||||||||.|
RBAM_010980__ 1 ATGTCCTTTC-TCGAGTTCACAGTTCCTCCGTTCCCGGTCTTTATCGCTG 49
BSNT_01844___ 50 CTGGGGAAGGGGTTTTTAAAAAAGGAGAAACCCATGTGAAACGTGTATTC 99
|.||.|||||.||.||.||||||||.|||||||||||||.|||.||.|||
RBAM_010980__ 50 CGGGAGAAGGAGTGTTCAAAAAAGGCGAAACCCATGTGAGACGGGTCTTC 99
BSNT_01844___ 100 TCCGTGTTTGATCTGATATATGTCAAACAGGGAACGT--TATATATAACG 147
.|.||||||||||||.|.|||||.|||.|.|| ||| |.||.||.||.
RBAM_010980__ 100 CCGGTGTTTGATCTGCTGTATGTGAAAGAAGG--CGTCCTCTACATTACA 147
BSNT_01844___ 148 GAAAATGAAACATCGTTTTCTGTTGAAGGCGGCGAGTACATCTTGCTTTC 197
|||.|.||||...|.|||||.|||||||.|||.||.||.||..|||||||
RBAM_010980__ 148 GAAGACGAAAACGCCTTTTCCGTTGAAGCCGGAGAATATATTCTGCTTTC 197
BSNT_01844___ 198 TCCCGGTCTTGAACACTACGGGACGAAGGGCAGTGATGAAGCAACCTCCT 247
||||||.||||||||.||||||||.||.||||||||.|||.|.||.||||
RBAM_010980__ 198 TCCCGGCCTTGAACATTACGGGACAAAAGGCAGTGAAGAAACGACATCCT 247
BSNT_01844___ 248 ACTATTGGCTTCACTTCGATGAACATCGA------TATGAATTTACGGCA 291
|.|..||||||||.||.||.| || |||||..|..||| |
RBAM_010980__ 248 ATTCGTGGCTTCATTTTGAGG------GAGCGGATTATGAGATGGCGG-A 290
BSNT_01844___ 292 AA-----GGGAGGCAGCAACTGGTCTGAGCTTCAGCAGG----AAAAAGG 332
|| ||| |.|||.|||||.|.||| .||| |||||||
RBAM_010980__ 291 AACAACCGGG----AACAATTGGTCGGGGCT----GAGGCGAAAAAAAGG 332
BSNT_01844___ 333 GAGCTTCGAAGAGCCGGCCCGCTACGGATTGGCCTTGCCGAGAAAAGGCA 382
||||||.|||||||||.||||||||.|..||.||.|||||..||||||.|
RBAM_010980__ 333 GAGCTTTGAAGAGCCGTCCCGCTACCGGCTGTCCCTGCCGCAAAAAGGGA 382
BSNT_01844___ 383 AGGTGCAG-CGCCCGCAGTTTATGGC---GCA--GCAGTTTGAAAAGCTG 426
||||| || ||||||||||||||||| ||| .||||.| .|||
RBAM_010980__ 383 AGGTG-AGACGCCCGCAGTTTATGGCCGGGCAATTCAGTGT-----CCTG 426
BSNT_01844___ 427 ATCGATTACTCTGCGGAAAACTCTGATTTGCCGCTCAGAAAGCAAATTTT 476
|..|||.||...||.||.|||||.|||.||||||||||||||||.|||.|
RBAM_010980__ 427 ACAGATGACAGCGCCGAGAACTCCGATCTGCCGCTCAGAAAGCAGATTCT 476
BSNT_01844___ 477 ATTTGCGGAGCTGATGCTGCATCTTCAAAAAGAAGCGTTCCAAATACCGT 526
.||||..||||||.||||.||||||||.|||||||||||||||||.||||
RBAM_010980__ 477 GTTTGAAGAGCTGCTGCTCCATCTTCAGAAAGAAGCGTTCCAAATCCCGT 526
BSNT_01844___ 527 CTGC----GAAAGAGCGGGTAGCCTGGGAGGCGGCCCGGTACTTACAGGA 572
|.|| |||||| ||.||.||||||||.|||||||||.|.|||||
RBAM_010980__ 527 CCGCAAAGGAAAGA----GTCGCATGGGAGGCCGCCCGGTACCTGCAGGA 572
BSNT_01844___ 573 GCACTATAAGGAAAAGACGACAATCAAGGATCTGTCGCTC------GCCC 616
||||||..||||.||.||.||.|||||.| ||||| ||.|
RBAM_010980__ 573 GCACTACCAGGAGAAAACAACTATCAAAG------CGCTCTCTTCGGCTC 616
BSNT_01844___ 617 TTCACTACCATCAGGATTATGTGAGCCGCTGTATGCAGCAGGTGCTCGGC 666
||||.|||.|.||.||.||.||||.|||||||||||||||||||||||||
RBAM_010980__ 617 TTCATTACAACCAAGACTACGTGACCCGCTGTATGCAGCAGGTGCTCGGC 666
BSNT_01844___ 667 GTAAC-TCCGGCACAATACACGAACCGGGTGAGAATGACGGAAGCGAAGC 715
||.|| .||||| ||.||.||||||...||.|||||||||||.|||||.|
RBAM_010980__ 667 GTCACGCCCGGC-CAGTATACGAACAAAGTCAGAATGACGGAGGCGAAAC 715
BSNT_01844___ 716 GTCTTTTATCCTCTACAAATGATAAAATGGGCGTTATTGCGGAAACGGTC 765
|||||||.|||.|.||.|||||.||||||||.|..||.|||||..|..||
RBAM_010980__ 716 GTCTTTTGTCCGCAACCAATGACAAAATGGGGGCGATCGCGGACGCCATC 765
BSNT_01844___ 766 GGAATGGAAGATCCGACATACTTTTCAAAACTCTTTAAGCAGATAGAAGG 815
||.|||||.||.||.||.||.|||||.|||||.|||||.|||||.|||||
RBAM_010980__ 766 GGTATGGAGGACCCAACCTATTTTTCCAAACTGTTTAAACAGATTGAAGG 815
BSNT_01844___ 816 CATTTCACCAATTGAATACCGGAAAATTGTCAGCCGGAA---------AG 856
||||||.||..||||||||||.|||.|.||.|||||||| |
RBAM_010980__ 816 CATTTCGCCGCTTGAATACCGCAAATTCGTAAGCCGGAAGACGGACTGA- 864
BSNT_01844___ 857 TTCAATAA 864
RBAM_010980__ 864 -------- 864
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