Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01854 and RBAM_011000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_01854___yisX.1.9828.seq
# -bsequence dna-align/RBAM_011000___yisX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01854___yisX-RBAM_011000___yisX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01854___yisX-RBAM_011000___yisX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01854___yisX
# 2: RBAM_011000___yisX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 663
# Identity: 430/663 (64.9%)
# Similarity: 430/663 (64.9%)
# Gaps: 60/663 ( 9.0%)
# Score: 1182.5
#
#
#=======================================
BSNT_01854___ 1 ATGAATAAAATCGCAATTCAAAAACCAAACATACCAGAAA-ACCTGCAAA 49
||||||| |.||.||||||||.||.|| ||.|||| |..||
RBAM_011000__ 1 ATGAATA------CGATCCAAAAACCGAAAAT-CCCGAAAGAATTG---- 39
BSNT_01854___ 50 CCGCAGAT---TTTCA-TGATGC-CGTGACGCAGGATGATGTAATCAGCA 94
|||..|.| ||||| .||.|| |.| |||||.||..|.||.| |
RBAM_011000__ 40 CCGGTGCTTTCTTTCACAGAAGCGCTT----CAGGACGACCTCATAA--A 83
BSNT_01854___ 95 TGCATTTGT--TTGAAGA-----TTGTACCATCTGCGGCGAAGATATCGA 137
.|.|.|.|| |.|||.| |.||| .|||||.|| .|.||
RBAM_011000__ 84 AGAAGTCGTCATAGAAAACGCCGTCGTA-----AGCGGCAAA---CTGGA 125
BSNT_01854___ 138 AAGACTCTGTGTTGAAAAAACGGTATTCAGAAATGTCGTCTTTATCGATG 187
..|.||..|.|..||||||....|.||||||||...|||.||||..||||
RBAM_011000__ 126 CGGCCTGCGCGCCGAAAAAGTCATTTTCAGAAACACCGTTTTTACGGATG 175
BSNT_01854___ 188 TGTCTTTTCGGCATATTGAACTG-ACCGATGTGATCTTTGAAAAGTGCGA 236
|.|||||..|.|||||.||| || ||.|||||..|.|||||.||.||.||
RBAM_011000__ 176 TCTCTTTCAGACATATGGAA-TGTACGGATGTCCTGTTTGACAAATGTGA 224
BSNT_01854___ 237 TTTATCAAACGCCGATTTCAGCGG-GGCTGTCATTCACAGAACTTCAGTT 285
|.|.||||||||.||||||||||| .|| .||||.||.|||||..|..||
RBAM_011000__ 225 TGTCTCAAACGCTGATTTCAGCGGAAGC-ATCATCCATAGAACGGCGTTT 273
BSNT_01854___ 286 AAGCAGTCAAAAATGGTTGGAATGAATGTGGCGGA---AGCAACGCTTCG 332
.||||.||||||.|..|.||..||||..||||||| .||.|.||.||
RBAM_011000__ 274 CAGCATTCAAAACTTCTCGGCTTGAACCTGGCGGATTCCGCCATGCGTC- 322
BSNT_01854___ 333 GAATGTTTCATTCGAGGAATGCCACGGACATTTCAGCTCATTTTCGTATT 382
||||....||.||.||.||||.||.|.|||.||||||.||....||||
RBAM_011000__ 323 --ATGTACGGTTTGAAGACTGCCTCGCAAATTACAGCTCCTTCAGCTATT 370
BSNT_01854___ 383 CAAATATGAAACAAGTTCGATTTGATCA-TTGTGCTCTTATGCAAAGTGA 431
|.||||||||.||.||.||.||||| || .||.|||||||...|||||||
RBAM_011000__ 371 CCAATATGAAGCATGTCCGGTTTGA-CACGTGCGCTCTTACAGAAAGTGA 419
BSNT_01854___ 432 ATGCAGCAATACGGTGCTCCAGCAGACACACTTTGACGGATGCGAATTGG 481
.||.|...||.|.||.||..|..|.|||.|..||||||..||.||.|||.
RBAM_011000__ 420 GTGGAATGATGCCGTTCTTGAATACACAGATCTTGACGTCTGTGATTTGA 469
BSNT_01854___ 482 AAGGCGCCAGCTTTACCGGCACATCCCTTCAAAACATGGACATCAGCACG 531
|.|||||.|.|||.|.||||||.||.|||...||.|||||.|||||||||
RBAM_011000__ 470 ACGGCGCAAACTTCATCGGCACGTCTCTTTTTAATATGGATATCAGCACG 519
BSNT_01854___ 532 TGCCGTTTTGAACAGCTTCATGTCTCCCTCGACAAATTGAAAGGCTGCAA 581
|||...|||||.||.||.||.|||||.||.||.||..|||||||.|||..
RBAM_011000__ 520 TGCACATTTGATCACCTGCACGTCTCACTTGAGAAGCTGAAAGGATGCCG 569
BSNT_01854___ 582 AATCGCACCTGAGCATGCGATTGCCTTCGCCAG-GGCACTGGGAGC---T 627
.|||.|.||.|.||||||..|..|.|||| ||| .||.||.||||| |
RBAM_011000__ 570 CATCTCTCCGGCGCATGCCGTGACATTCG-CAGAAGCGCTCGGAGCCATT 618
BSNT_01854___ 628 GTCATCGT-ATAA 639
||.| ||| |
RBAM_011000__ 619 GTGA-CGTGA--- 627
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